Gene omics information

Query gene ID At3g54770
Gene name RNA recognition motif (RRM)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.7586.9At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.S.X.H.G.
0.7586.9At3g50640824227unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.6781.6At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.4457.2At2g18980816415peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
154.199.9GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
132.099.9GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
109.999.9GSM252692Section of Root from 270 mm to 340 mm harvested immediately rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
104.699.9GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.099.9GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
81.999.9GSM226535L5SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
76.899.9GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
76.599.9GSM252691Section of Root from 270 mm to 340 mm harvested immediately rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
73.299.9GSM184491Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
73.199.9GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.082e-654At1g33470840240RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.077e-652At1g76460843979RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.034e-446At2g37780818355DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBC.G.S.X.
0.034e-446At1g20880838681RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.046e-342At1g78260844161RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.023e-240At1g66130842927oxidoreductase N-terminal domain-containing proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-550Glycine maxGma.5236.1.S1_atBI969602--4e-8At1g20880RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.043e-342Hordeum vulgareContig12534_atContig12534--4e-1At1g69828-C.G.S.X.
0.129e-1065Oryza sativaOs03g0286500AK060649.1-RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 28e-10At3g54770RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.154e-859Populus trichocarpaPtpAffx.18878.1.S1_atCV230477hypothetical protein-2e-8At3g54770RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.86887.1.S1_atCA599389--2e-2At4g09270unknown proteinC.G.S.X.
0.055e-134Vitis vinifera1608116_atCF371922--3e+0At4g08270-C.G.S.X.
0.033e+032Zea maysZmAffx.259.1.S1_s_atAI668215Glycine-rich protein-9e-1At5g40970unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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