CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54500

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
0.80 89.8 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. S.X. H.G.
0.80 89.8 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF S.X. H.G.
0.67 81.6 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins S.X. H.G.
0.57 73.8 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
76.1 99.9 E-MEXP-1443-raw-cel-1581869515
59.9 99.8 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
51.4 99.8 E-MEXP-1443-raw-cel-1581869573
40.1 99.8 GSM184151 ATR1_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
36.2 99.7 GSM318625 Apex_octa_18DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
34.1 99.7 GSM318618 Apex_Col_14DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
33.0 99.7 E-ATMX-33-raw-cel-1562596264
31.3 99.7 GSM318345 ML_35DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
30.9 99.7 GSM318624 Apex_octa_18DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
30.1 99.7 GSM318620 Apex_mir-3TCP_14DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At4g31770 829305 calcineurin-like phosphoesterase family protein F:hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity;P:mRNA processing;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 2e-1 38 At3g24430 822033 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101) encodes a MRP-like protein with a nucleotide-binding domain. C.G. S.X.
0.01 2e-1 38 At2g18110 816323 elongation factor 1-beta, putative / EF-1-beta, putative F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOFPB C.G. S.X.
0.01 2e-1 38 At1g65660 842877 SMP1 (SWELLMAP 1) Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells. C.G. S.X.
0.01 1e+0 36 At2g27810 817328 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV C.G. S.X.
0.01 1e+0 36 At1g66950 843013 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.01 1e+0 36 At1g05880 837098 nucleic acid binding / protein binding / structural molecule/ zinc ion binding F:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-8 59 Glycine max Gma.8021.2.S1_at CA782136 - - 6e-8 At3g54500 - C.G. S.X.
0.01 2e+0 34 Hordeum vulgare S0000800234C01F1_s_at S0000800234C01F1 - - 4e+0 At4g16805 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa Os07g0283200 AK106663.1 - Conserved hypothetical protein 8e-1 At3g54500 - C.G. S.X.
0.05 2e-9 65 Populus trichocarpa PtpAffx.220226.1.S1_at pmrna36586 hypothetical protein - 3e-10 At3g54500 - C.G. S.X.
0.02 4e+0 34 Triticum aestivum Ta.21991.1.S1_at CA713415 - - 1e-1 At2g31810 acetolactate synthase small subunit, putative C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1617121_at CF516389 hypothetical protein LOC100248068 - 5e-1 At1g49400 emb1129 (embryo defective 1129) C.G. S.X.
0.01 4e-1 36 Zea mays Zm.581.1.S1_at AF237945.1 HCF106C precursor protein - 5e-1 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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