Gene omics information

Query gene ID At3g54500
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBS.X.H.G.
0.8089.8At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.8089.8At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFS.X.H.G.
0.6781.6At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsS.X.H.G.
0.5773.8At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.199.9E-MEXP-1443-raw-cel-1581869515
59.999.8GSM38668NSNPGSE2268Arabidopsis polysome microarray
51.499.8E-MEXP-1443-raw-cel-1581869573
40.199.8GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
36.299.7GSM318625Apex_octa_18DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
34.199.7GSM318618Apex_Col_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
33.099.7E-ATMX-33-raw-cel-1562596264
31.399.7GSM318345ML_35DAS_2GSE12676Arabidopsis thaliana Ler developmental series
30.999.7GSM318624Apex_octa_18DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
30.199.7GSM318620Apex_mir-3TCP_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-240At4g31770829305calcineurin-like phosphoesterase family proteinF:hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity;P:mRNA processing;C:cellular_component unknown;MFOPBC.G.S.X.
0.012e-138At3g24430822033HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)encodes a MRP-like protein with a nucleotide-binding domain.C.G.S.X.
0.012e-138At2g18110816323elongation factor 1-beta, putative / EF-1-beta, putativeF:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOFPBC.G.S.X.
0.012e-138At1g65660842877SMP1 (SWELLMAP 1)Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.C.G.S.X.
0.011e+036At2g27810817328xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVC.G.S.X.
0.011e+036At1g66950843013PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVC.G.S.X.
0.011e+036At1g05880837098nucleic acid binding / protein binding / structural molecule/ zinc ion bindingF:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.059e-859Glycine maxGma.8021.2.S1_atCA782136--6e-8At3g54500-C.G.S.X.
0.012e+034Hordeum vulgareS0000800234C01F1_s_atS0000800234C01F1--4e+0At4g16805unknown proteinC.G.S.X.
0.022e+036Oryza sativaOs07g0283200AK106663.1-Conserved hypothetical protein8e-1At3g54500-C.G.S.X.
0.052e-965Populus trichocarpaPtpAffx.220226.1.S1_atpmrna36586hypothetical protein-3e-10At3g54500-C.G.S.X.
0.024e+034Triticum aestivumTa.21991.1.S1_atCA713415--1e-1At2g31810acetolactate synthase small subunit, putativeC.G.S.X.
0.022e-240Vitis vinifera1617121_atCF516389hypothetical protein LOC100248068-5e-1At1g49400emb1129 (embryo defective 1129)C.G.S.X.
0.014e-136Zea maysZm.581.1.S1_atAF237945.1HCF106C precursor protein-5e-1At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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