Gene omics information

Query gene ID At3g54320
Gene name WRI1 (WRINKLED 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2014.4At3g54320824599WRI1 (WRINKLED 1)WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.S.X.H.G.
0.5065.3At2g47750819387GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMFS.X.H.G.
0.4659.8At1g43640840948AtTLP5 (TUBBY LIKE PROTEIN 5)Member of TLP familyS.X.H.G.
0.4253.9At3g25260822120proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFS.X.H.G.
0.4050.8At1g56170842070NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissuesS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
137.699.9GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
124.299.9GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
122.399.9GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
116.999.9E-ATMX-1-raw-cel-1112746154
116.399.9GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
106.599.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
104.099.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
103.599.9GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
102.499.9GSM131693ATGE_78_FGSE5634AtGenExpress: Developmental series (siliques and seeds)
98.199.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.037e-1065At5g57390835845AIL5 (AINTEGUMENTA-LIKE 5)Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.C.G.S.X.
0.063e-963At1g16060838176ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVC.G.S.X.
0.052e-757At2g41710818770ovule development protein, putativeF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBVC.G.S.X.
0.094e-550At1g79700844309ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-448Glycine maxGmaAffx.91601.1.S1_s_atCF807326--1e-47At5g57390AIL5 (AINTEGUMENTA-LIKE 5)C.G.S.X.
0.033e-136Hordeum vulgareContig25984_atContig25984--9e-1At4g24380unknown proteinC.G.S.X.
0.106e-963Oryza sativaOs06g01457009634.m00456--1e-2At1g16060ovule development protein, putativeC.G.S.X.
0.342e-757Populus trichocarpaPtpAffx.209489.1.S1_atpmrna18814AP2 domain-containing transcription factor-9e-5At3g54320WRI1 (WRINKLED 1)C.G.S.X.
0.062e-448Triticum aestivumTaAffx.65356.1.S1_atBJ249131--7e-5At3g54320WRI1 (WRINKLED 1)C.G.S.X.
0.053e-342Vitis vinifera1610205_atCF510900hypothetical protein LOC100252316-4e-34At4g37750ANT (AINTEGUMENTA)C.G.S.X.
0.072e-1789Zea maysZm.8972.1.S1_atCD435957hypothetical protein LOC100217237-7e-17At3g54320WRI1 (WRINKLED 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006109Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates.
XGO:0006110Any process that modulates the frequency, rate or extent of glycolysis.
XGO:0008610The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
XGO:0009744A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
XGO:0019432The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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