CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54190

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.85 92.4 At3g54190 824586 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.54 69.5 At1g50200 841442 ALATS (ALANYL-TRNA SYNTHETASE) F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFP S.X. H.G.
0.52 67.4 At2g05230 815071 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV S.X. H.G.
0.52 67.4 At2g36720 818244 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.51 66.3 At2g38440 818425 SCAR2 (SCAR HOMOLOG 2) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. S.X. H.G.
0.48 62.5 At5g28850 833004 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPF S.X. H.G.
0.46 59.8 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
0.45 58.3 At3g26560 822264 ATP-dependent RNA helicase, putative F:in 6 functions;P:unknown;C:cytosol, mitochondrion;MOBFPVA S.X. H.G.
0.44 57.2 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. S.X. H.G.
0.44 57.2 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.3 99.7 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
22.3 99.6 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.6 99.5 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.4 99.5 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.4 99.5 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.4 99.5 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.4 99.5 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.6 99.4 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.3 99.2 E-MEXP-1797-raw-cel-1669767976
9.7 99.1 E-MEXP-1797-raw-cel-1669767967
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 1184 At2g38630 818445 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 2e-1 38 At5g23910 832456 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOPFB C.G. S.X.
0.01 2e-1 38 At4g18905 827625 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAV C.G. S.X.
0.01 7e-1 36 At5g55470 835640 ATNHX3 member of Sodium proton exchanger family C.G. S.X.
0.01 7e-1 36 At5g48650 834922 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA C.G. S.X.
0.01 7e-1 36 At3g25150 822106 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MBPFOVA C.G. S.X.
0.02 7e-1 36 At1g21720 838776 PBC1 (PROTEASOME BETA SUBUNIT C1) 20S proteasome beta subunit PBC1 truncated protein (PBC1) C.G. S.X.
0.01 3e+0 34 At5g65450 836670 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17) Encodes a ubiquitin-specific protease. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 1e-73 278 Glycine max GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.29 3e-23 109 Hordeum vulgare Contig14966_at Contig14966 - - 7e-23 At3g54190 - C.G. S.X.
0.38 5e-28 127 Oryza sativa Os05g0482600 AK120343.1 - WD40-like domain containing protein 3e-28 At3g54190 - C.G. S.X.
0.66 1e-157 557 Populus trichocarpa PtpAffx.219823.1.S1_at pmrna35963 hypothetical protein - 9e-158 At3g54190 - C.G. S.X.
0.21 4e-21 103 Triticum aestivum TaAffx.122624.2.S1_at BG909421 - - 1e-21 At3g54190 - C.G. S.X.
0.11 1e-18 93 Vitis vinifera 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - C.G. S.X.
0.28 6e-21 101 Zea mays Zm.3436.1.A1_at AI964659 hypothetical protein LOC100217002 - 1e-20 At3g54190 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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