CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54170

Gene name ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g54170 824584 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A. S.X. H.G.
0.50 65.3 At5g06910 830582 ATJ6 (Arabidopsis J-domain protein 6) DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain. S.X. H.G.
0.44 57.2 At4g25210 828624 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:nucleolus, chloroplast;OMFBPVA S.X. H.G.
0.33 38.1 At3g18165 821343 MOS4 (Modifier of snc1,4) Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity. S.X. H.G.
0.33 38.1 At4g19150 827653 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
0.22 17.5 At5g16260 831486 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.1 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.1 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.7 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.1 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.7 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.3 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.0 99.6 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.5 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.1 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At5g49710 835034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPMOF C.G. S.X.
0.01 3e-2 40 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. C.G. S.X.
0.02 3e-2 40 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. C.G. S.X.
0.01 1e-1 38 At3g16620 820913 ATTOC120 component of TOC complex, plastid protein import machinery. C.G. S.X.
0.01 5e-1 36 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA C.G. S.X.
0.02 5e-1 36 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 1e-42 174 Glycine max Gma.13073.1.S1_at BQ297562 - - 1e-42 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.08 4e-6 52 Hordeum vulgare Contig10413_at Contig10413 - - 1e-5 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.26 5e-24 113 Oryza sativa Os06g0474200 9634.m02668 - Conserved hypothetical protein 3e-24 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.38 2e-78 293 Populus trichocarpa PtpAffx.62170.1.A1_at CX176430 hypothetical protein - 9e-79 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.22 2e-10 67 Triticum aestivum Ta.6188.1.S1_a_at CA743551 - - 2e-10 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.15 1e-11 69 Vitis vinifera 1618109_at CB971579 - - 2e-11 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.776.1.A1_at AI746212 - - 2e-1 At4g28630 ATM1 (ABC TRANSPORTER OF THE MITOCHONDRION) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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