CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54150

Gene name embryo-abundant protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At3g54150 824582 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.62 77.3 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.55 70.6 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO S.X. H.G.
0.55 70.6 At1g18570 838438 MYB51 (MYB DOMAIN PROTEIN 51) Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. S.X. H.G.
0.55 70.6 At1g19020 838483 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.54 69.5 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family S.X. H.G.
0.53 68.6 At1g61370 842431 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.52 67.4 At3g09020 820054 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOB S.X. H.G.
0.52 67.4 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.6 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
137.5 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
133.6 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
98.7 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
73.7 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
73.6 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
65.4 99.8 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
63.0 99.8 E-NASC-76-raw-cel-1359879132
62.5 99.8 E-MEXP-807-raw-cel-1173272948
52.7 99.8 E-MEXP-1797-raw-cel-1669767940
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 2e-68 260 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA C.G. S.X.
0.29 4e-14 79 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA C.G. S.X.
0.02 1e-1 38 At3g27320 822351 hydrolase F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.01 1e-1 38 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. C.G. S.X.
0.02 5e-1 36 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) C.G. S.X.
0.02 5e-1 36 At3g03620 821204 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA C.G. S.X.
0.02 5e-1 36 At2g30710 817622 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFP C.G. S.X.
0.03 2e+0 34 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max Gma.6933.1.S1_s_at BQ628624 - - 3e-2 At3g54150 embryo-abundant protein-related C.G. S.X.
0.03 1e+1 30 Hordeum vulgare Contig3396_s_at Contig3396 - - 1e+0 At5g18540 unknown protein C.G. S.X.
0.02 9e-1 36 Oryza sativa Os.55540.1.S1_at - - - 0 C.G. S.X.
0.06 1e-2 42 Populus trichocarpa PtpAffx.205139.1.S1_at pmrna10174 hypothetical protein - 1e-1 At3g61210 embryo-abundant protein-related C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.121096.1.S1_at CA661686 - - 3e-1 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1609811_at CF208639 - - 4e+0 At5g37850 SOS4 (SALT OVERLY SENSITIVE 4) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.10299.1.S1_at AW172106 - - 7e-1 At4g15910 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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