Gene omics information

Query gene ID At3g54150
Gene name embryo-abundant protein-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At3g54150824582embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAS.X.H.G.
0.6277.3At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.5570.6At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOS.X.H.G.
0.5570.6At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.S.X.H.G.
0.5570.6At1g19020838483unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
0.5570.6At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5469.5At3g59700825139ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE)member of Receptor kinase-like protein familyS.X.H.G.
0.5368.6At1g61370842431S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.5267.4At3g09020820054alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinF:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOBS.X.H.G.
0.5267.4At1g07135837224glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
165.6100.0GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
137.599.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
133.699.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
98.799.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
73.799.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
73.699.9GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
65.499.8GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutants
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.612e-68260At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAC.G.S.X.
0.294e-1479At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAC.G.S.X.
0.021e-138At3g27320822351hydrolaseF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVC.G.S.X.
0.011e-138At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.C.G.S.X.
0.025e-136At3g22740821845HMT3homocysteine S-methyltransferase (HMT3)C.G.S.X.
0.025e-136At3g03620821204MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMAC.G.S.X.
0.025e-136At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPC.G.S.X.
0.032e+034At5g10830830950embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGma.6933.1.S1_s_atBQ628624--3e-2At3g54150embryo-abundant protein-relatedC.G.S.X.
0.031e+130Hordeum vulgareContig3396_s_atContig3396--1e+0At5g18540unknown proteinC.G.S.X.
0.029e-136Oryza sativaOs.55540.1.S1_at---0C.G.S.X.
0.061e-242Populus trichocarpaPtpAffx.205139.1.S1_atpmrna10174hypothetical protein-1e-1At3g61210embryo-abundant protein-relatedC.G.S.X.
0.031e-138Triticum aestivumTaAffx.121096.1.S1_atCA661686--3e-1At1g04445zinc finger (C2H2 type) family proteinC.G.S.X.
0.022e+032Vitis vinifera1609811_atCF208639--4e+0At5g37850SOS4 (SALT OVERLY SENSITIVE 4)C.G.S.X.
0.023e+032Zea maysZm.10299.1.S1_atAW172106--7e-1At4g15910ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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