CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g54040

Gene name photoassimilate-responsive protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.72 84.8 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.67 81.6 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.65 79.6 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.63 78.1 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.57 73.8 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.56 73.0 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.56 73.0 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.8 99.9 E-MEXP-828-raw-cel-1156922905
105.9 99.9 E-MEXP-828-raw-cel-1156922809
89.7 99.9 E-MEXP-828-raw-cel-1156922342
82.1 99.9 E-MEXP-828-raw-cel-1156922318
80.6 99.9 E-MEXP-828-raw-cel-1156922553
75.7 99.9 E-MEXP-828-raw-cel-1156922846
71.6 99.9 E-MEXP-828-raw-cel-1156922708
70.8 99.9 E-MEXP-828-raw-cel-1156922368
67.9 99.9 E-MEXP-828-raw-cel-1156922572
66.8 99.8 E-MEXP-828-raw-cel-1156922829
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g63550 836474 - F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 1e+0 34 At5g03340 831870 cell division cycle protein 48, putative / CDC48, putative F:in 6 functions;P:unknown;C:cell wall;BOMFPAV C.G. S.X.
0.02 1e+0 34 At3g57560 824923 aspartate/glutamate/uridylate kinase family protein encodes a N-acetylglutamate kinase, involved in arginine biosynthesis C.G. S.X.
0.01 1e+0 34 At1g08070 837325 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.02 4e+0 32 At5g15610 831413 proteasome family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.03 4e+0 32 At5g51860 835261 MADS-box protein (AGL72) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO C.G. S.X.
0.02 4e+0 32 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Glycine max PsAffx.CL3Contig13_at PsAffx.CL3Contig13 - - 1e+0 At5g54460 wound-responsive protein-related C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig23117_at Contig23117 - - 5e+0 At3g54040 photoassimilate-responsive protein-related C.G. S.X.
Os07g0432400 0 Os08g0280950 Oryza sativa Os04g0275780 NM_193923.1 - - 1e+0 At3g54040 photoassimilate-responsive protein-related C.G. S.X.
0.09 6e-3 42 Populus trichocarpa PtpAffx.60708.1.S1_at DN493803 hypothetical protein - 7e+0 At5g56480 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.107412.1.S1_at CA700183 - - 3e+0 At3g54040 photoassimilate-responsive protein-related C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1618926_at CB976221 - - 6e-1 At5g22608 unknown protein C.G. S.X.
0.02 3e-2 38 Zea mays Zm.15385.1.A1_at BM378219 VAMP protein SEC22 - 5e-4 At3g52470 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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