Gene omics information

Query gene ID At3g54000
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g54000824567-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2522.6At4g14350827078protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane, phragmoplast, cytoplasm;MOPFBVAS.X.H.G.
0.2217.5At2g18090816321PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPBOFS.X.H.G.
0.1710.2At1g06070837116bZIP transcription factor, putative (bZIP69)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVAS.X.H.G.
0.135.8At4g24060828506Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;OPMFBS.X.H.G.
0.114.1At1g43850840981SEU (seuss)Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.S.X.H.G.
0.040.9At5g62090836329-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAS.X.H.G.
0.020.4At2g25690817110senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
162.399.9GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
139.999.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
123.399.9GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
119.199.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
80.599.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
77.899.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.399.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
62.899.8GSM142647MC002_ATH1_A9.1-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
60.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.299.8GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-138At1g54370841878NHX5F:sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity;P:lithium ion transport, sodium ion transport;C:integral to membrane;BMOPFAC.G.S.X.
0.025e-136At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMC.G.S.X.
0.015e-136At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).C.G.S.X.
0.022e+034At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.C.G.S.X.
0.022e+034At4g285563770548RIC7Encodes RIC7, the downstream effector of active Rop2 GTPase.C.G.S.X.
0.012e+034At4g23500828450glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cell wall;FPBOMAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxPsAffx.CL321Contig1_atPsAffx.CL321Contig1--7e+0At2g05510glycine-rich proteinC.G.S.X.
0.034e-342Hordeum vulgareContig15418_atContig15418--4e+0At5g54940eukaryotic translation initiation factor SUI1, putativeC.G.S.X.
0.023e-138Oryza sativaOs01g0261100NM_187954.1-Zn-finger, RING domain containing protein1e-2At1g19680protein binding / zinc ion bindingC.G.S.X.
0.023e+034Populus trichocarpaPtpAffx.59550.1.S1_atBU893581hypothetical protein-1e-2At5g50740metal ion bindingC.G.S.X.
0.022e+034Triticum aestivumTaAffx.111246.3.S1_atCA647304--7e-2At5g10390histone H3C.G.S.X.
0.022e+032Vitis vinifera1620172_atCF373716hypothetical protein LOC100241577-2e+0At5g37760DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.024e+032Zea maysZmAffx.441.1.A1_s_atAI676998--3e+0At3g54000-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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