Gene omics information

Query gene ID At3g53980
Gene name protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g53980824565protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.6781.6At4g30460829169glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
0.6176.7At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAS.X.H.G.
0.3541.6At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.2726.2At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
54.799.8E-MEXP-828-raw-cel-1156922684
42.199.8GSM75512Col-0 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
42.099.8GSM75515Col-0 6h MOCK replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
38.199.8E-MEXP-828-raw-cel-1156922891
36.999.7GSM75508Col-0 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
36.899.7GSM142635MC002_ATH1_A5.1-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.599.7GSM142637MC002_ATH1_A5.3-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.199.7GSM142636MC002_ATH1_A5.2-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.199.7E-MEXP-828-raw-cel-1156922659
31.099.7GSM179959Arabidopsis roots, air treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.131e-859At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PC.G.S.X.
0.022e-136At5g44316834456ATP-binding-cassette transporter, putativeF:protein binding;P:iron-sulfur cluster assembly;C:unknown;OBAPMC.G.S.X.
0.016e-134At4g24040828504TRE1 (TREHALASE 1)Encodes a trehalase, member of Glycoside Hydrolase Family 37.C.G.S.X.
0.036e-134At3g13420820542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.026e-134At3g20660821613AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:chloroplast thylakoid membrane, membrane;BMFPOAC.G.S.X.
0.026e-134At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.191e-654Glycine maxGma.6278.1.S1_atBQ612647--8e-7At3g53980protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.058e-236Hordeum vulgareContig7968_atContig7968--3e-1At3g53980protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.041e+034Oryza sativaOsAffx.27541.1.S1_at---0C.G.S.X.
0.232e-550Populus trichocarpaPtp.7218.1.S1_atCV273365hypothetical protein-2e-5At3g53980protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.043e+032Triticum aestivumTa.28117.1.S1_x_atCA648422--4e-1At5g05960protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.043e+030Vitis vinifera1610259_atCF209770WD-repeat 1-2e-14At5g24520TTG1 (TRANSPARENT TESTA GLABRA 1)C.G.S.X.
0.031e+032Zea maysZm.11802.1.A1_atCK986002--6e+0At5g49300zinc finger (GATA type) family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage