CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53720

Gene name ATCHX20 (CATION/H+ EXCHANGER 20)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g53720 824539 ATCHX20 (CATION/H+ EXCHANGER 20) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells. S.X. H.G.
0.71 84.2 At3g51760 824339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. S.X. H.G.
0.64 78.9 At3g55500 824715 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. S.X. H.G.
0.54 69.5 At3g17070 820964 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.53 68.6 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF S.X. H.G.
0.44 57.2 At5g65590 836685 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast;POF S.X. H.G.
0.44 57.2 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.43 55.3 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P S.X. H.G.
0.41 52.4 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
649.2 100.0 E-MEXP-1443-raw-cel-1581869745
579.3 100.0 E-MEXP-1443-raw-cel-1581869803
483.4 100.0 E-MEXP-1443-raw-cel-1581869515
199.9 100.0 E-MEXP-1443-raw-cel-1581869573
114.0 99.9 GSM74904 ice1_3H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
70.1 99.9 GSM74903 ice1_no treatment_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
59.6 99.8 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
53.4 99.8 GSM184907 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
48.7 99.8 GSM74905 ice1_3H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
45.3 99.8 GSM74907 ice1_6H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-11 69 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family C.G. S.X.
0.04 2e-5 52 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family C.G. S.X.
0.04 8e-5 50 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family C.G. S.X.
0.01 2e-2 42 At5g55040 835595 DNA binding F:DNA binding;P:biological_process unknown;C:mitochondrion;MOFPBVA C.G. S.X.
0.01 8e-2 40 At5g25070 832578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 8e-2 40 At5g49440 835004 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-2 40 At3g27720 822394 zinc finger protein-related F:zinc ion binding;P:unknown;C:unknown;MOFPVBA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-10 67 Glycine max PsAffx.psHB005xC21f_at PsAffx.psHB005xC21f - - 7e-11 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig8457_at Contig8457 - - 2e-5 At2g22080 unknown protein C.G. S.X.
0.05 3e-3 46 Oryza sativa Os05g0276100 AK069092.1 - Na+/H+ exchangeing protein-like 2e-5 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) C.G. S.X.
0.15 2e-9 65 Populus trichocarpa PtpAffx.206136.1.S1_at pmrna12170 cation proton exchanger - 1e-9 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.52888.1.S1_at CA699377 - - 4e+0 At5g57500 transferase, transferring glycosyl groups C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619874_at CB004955 - - 7e-3 At2g16580 auxin-responsive protein, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.9784.1.A1_at BM351072 - - 1e+0 At5g50840 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0030104 Any process involved in the maintenance of an internal equilibrium of water within an organism or cell.
X GO:0030007 Any process involved in the maintenance of an internal equilibrium of potassium ions at the level of a cell.
S GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage