Gene omics information

Query gene ID At3g53710
Gene name AGD6
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At3g53710824538AGD6A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.S.X.H.G.
0.2930.3At2g33220817884-F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I;MFPOS.X.H.G.
0.2217.5At1g08190837340vacuolar assembly protein, putative (VPS41)F:protein binding, binding, nucleotide binding, zinc ion binding;P:intracellular protein transport, vesicle-mediated transport;C:unknown;MOFPVBAS.X.H.G.
0.061.4At1g79830844322GC5 (golgin candidate 5)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).S.X.H.G.
0.020.4At3g61480825321-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.799.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
11.999.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
9.999.1GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.699.1GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
9.599.1GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.599.1GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.299.1GSM266664Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.299.1GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.199.1GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.999.0E-MEXP-1725-raw-cel-1669614603
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.635e-88325At2g37550818331AGD7A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.C.G.S.X.
0.024e-240At2g36270818199ABI5 (ABA INSENSITIVE 5)Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.C.G.S.X.
0.012e-138At3g27700822392RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVAC.G.S.X.
0.012e-138At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).C.G.S.X.
0.022e-138At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.148e-23109Glycine maxGmaAffx.7014.1.S1_atBI469035--7e-12At2g37550AGD7C.G.S.X.
0.112e-859Hordeum vulgareContig4778_atContig4778--6e-8At3g53710AGD6C.G.S.X.
0.113e-20101Oryza sativaOs03g0278400AK070052.1-ADP ribosylation GTPase-like protein (Fragment)3e-7At2g37550AGD7C.G.S.X.
0.162e-23111Populus trichocarpaPtp.6163.2.S1_s_atCF234204hypothetical protein-9e-24At3g53710AGD6C.G.S.X.
0.111e-861Triticum aestivumTa.2718.2.S1_a_atCK168482--9e-9At3g53710AGD6C.G.S.X.
0.052e-136Vitis vinifera1620423_atBQ794906hypothetical protein LOC100251169-3e-1At3g53710AGD6C.G.S.X.
0.025e+032Zea maysZm.19174.1.A1_atCO533891NAD(P)H-dependent oxidoreductase-5e+0At4g00920COP1-interacting protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0032312Any process that modulates the activity of the GTPase ARF.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04144Link to KEGG PATHWAYEndocytosis
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