CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53610

Gene name ATRAB8

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g53610 824529 ATRAB8 GTPase AtRAB8 (atrab8) S.X. H.G.
0.75 86.9 At5g25070 832578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.60 75.7 At5g25150 832586 TAF5 (TBP-ASSOCIATED FACTOR 5) Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID). S.X. H.G.
0.33 38.1 At3g54610 824626 GCN5 Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14. S.X. H.G.
0.25 22.6 At3g55005 824666 TON1B (tonneau 1b) Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
110.4 99.9 E-MEXP-1797-raw-cel-1669768084
90.3 99.9 E-MEXP-1797-raw-cel-1669768039
86.8 99.9 E-ATMX-31-raw-cel-1516947899
80.3 99.9 E-ATMX-31-raw-cel-1516947916
69.2 99.9 E-ATMX-31-raw-cel-1516947882
64.9 99.8 E-MEXP-1797-raw-cel-1669768003
64.0 99.8 E-MEXP-1797-raw-cel-1669768030
59.6 99.8 E-MEXP-1797-raw-cel-1669768012
57.9 99.8 E-MEXP-1797-raw-cel-1669768066
55.2 99.8 E-MEXP-1797-raw-cel-1669768021
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 8e-76 284 At3g46060 823749 ATRAB8A small GTP-binding protein (ara-3) C.G. S.X.
0.68 3e-66 252 At5g59840 836105 Ras-related GTP-binding family protein F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
0.56 1e-31 137 At5g03520 831817 ATRAB8C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.32 5e-31 135 At3g09900 820148 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 1e-56 220 Glycine max GmaAffx.91170.1.S1_x_at CF806895 - - 5e-58 At3g46060 ATRAB8A C.G. S.X.
0.50 4e-48 190 Hordeum vulgare Contig3337_s_at Contig3337 - - 5e-50 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.48 5e-54 212 Oryza sativa Os03g0819900 AY576526.1 - Ethylene-responsive small GTP-binding protein 4e-82 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) C.G. S.X.
0.61 2e-86 319 Populus trichocarpa Ptp.2072.2.S1_s_at CA931719 hypothetical protein - 6e-83 At3g46060 ATRAB8A C.G. S.X.
0.41 6e-46 184 Triticum aestivum Ta.6968.1.S1_at CK196001 - - 1e-45 At3g53610 ATRAB8 C.G. S.X.
0.53 5e-99 359 Vitis vinifera 1619471_at BQ794353 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A C.G. S.X.
0.35 6e-44 176 Zea mays Zm.2826.1.S1_at BM333443 hypothetical protein LOC100192989 - 2e-62 At3g46060 ATRAB8A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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