CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53480

Gene name PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.75 86.9 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.67 81.6 At3g20960 821646 CYP705A33 member of CYP705A S.X. H.G.
0.60 75.7 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.60 75.7 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family S.X. H.G.
0.50 65.3 At1g50520 841474 CYP705A27 member of CYP705A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.6 99.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
42.1 99.8 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
38.7 99.8 GSM75517 slr-1 2h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
38.3 99.8 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
37.0 99.7 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
36.1 99.7 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
35.7 99.7 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
35.2 99.7 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
34.6 99.7 GSM179973 Arabidopsis roots, IAA treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
33.8 99.7 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 0 1082 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV C.G. S.X.
0.06 2e-13 79 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV C.G. S.X.
0.07 2e-12 75 At4g15230 827187 PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.09 1e-11 73 At1g59870 842281 PEN3 (PENETRATION 3) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid�dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance. C.G. S.X.
0.06 4e-11 71 At4g15233 827188 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:membrane;BOMFAPV C.G. S.X.
0.06 6e-10 67 At4g15236 827189 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:membrane;BOMAFPV C.G. S.X.
0.06 6e-10 67 At4g15215 827186 PDR13 F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.07 6e-10 67 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. C.G. S.X.
0.06 4e-8 61 At2g29940 817544 PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-10 67 Glycine max GmaAffx.69411.1.S1_at BQ080393 - - 5e-11 At1g59870 PEN3 (PENETRATION 3) C.G. S.X.
0.03 7e-2 40 Hordeum vulgare Contig13986_at Contig13986 - - 4e-33 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.07 1e-9 67 Oryza sativa Os06g0554800 AK121182.1 - ABC transporter (PDR5-like) isolog (PDR1 ABCtransporter) 8e-34 At3g16340 PDR1 C.G. S.X.
0.16 9e-47 190 Populus trichocarpa PtpAffx.212545.1.S1_at pmrna24577 hypothetical protein - 6e-47 At3g53480 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) C.G. S.X.
0.03 4e-8 61 Triticum aestivum TaAffx.86413.1.S1_at CA608902 - - 8e-14 At3g16340 PDR1 C.G. S.X.
0.01 6e-1 36 Vitis vinifera 1621317_at CF514922 similar to F10B6.22 - 2e-27 At1g14810 semialdehyde dehydrogenase family protein C.G. S.X.
0.01 4e+0 34 Zea mays ZmAffx.74.1.A1_at AI665196 Hypothetical protein LOC100193550 - 5e-8 At5g38720 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006855 The directed movement of drugs across a membrane into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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