CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53300

Gene name CYP71B31

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g53300 824497 CYP71B31 putative cytochrome P450 S.X. H.G.
0.91 95.6 At1g66120 842926 acyl-activating enzyme 11 (AAE11) F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.90 95.1 At1g35310 840420 MLP168 (MLP-LIKE PROTEIN 168) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At1g61680 842465 TPS14 (TERPENE SYNTHASE 14) F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO S.X. H.G.
0.83 91.4 At2g24210 816955 TPS10 (terpene synthase 10) F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO S.X. H.G.
0.82 90.9 At1g70720 843409 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.70 83.5 At3g01530 821113 AtMYB57 (myb domain protein 57) Member of the R2R3 factor gene family. S.X. H.G.
0.70 83.5 At2g45580 819166 CYP76C3 member of CYP76C S.X. H.G.
0.70 83.5 At4g39480 830103 CYP96A9 (CYTOCHROME P450 96 A9) member of CYP96A S.X. H.G.
0.69 82.9 At2g17845 816294 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
419.3 100.0 E-MEXP-285-raw-cel-440783335
381.7 100.0 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
375.1 100.0 E-MEXP-285-raw-cel-440783273
353.0 100.0 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
311.6 100.0 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
254.5 100.0 GSM47047 rdr2-1 37 GSE2473 Small RNA biogenesis mutants
230.8 100.0 GSM128733 Hennig_1-5_flowers-CK_021114_2_B_Rep2_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
222.1 100.0 GSM47030 dcl2-1 20 GSE2473 Small RNA biogenesis mutants
184.2 100.0 GSM128730 Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
183.5 100.0 GSM47043 rdr1-1 33 GSE2473 Small RNA biogenesis mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1302 At5g35715 833546 CYP71B8 encodes a protein with cytochrome P450 domain C.G. S.X.
0.72 1e-132 474 At3g53290 824496 CYP71B30P missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html C.G. S.X.
0.69 6e-125 448 At3g53305 824498 CYP71B32 putative cytochrome P450 C.G. S.X.
0.56 2e-84 313 At3g44250 823550 CYP71B38 putative cytochrome P450 C.G. S.X.
0.57 8e-84 311 At3g53280 824495 CYP71B5 (CYTOCHROME P450 71B5) cytochrome P450 monooxygenase C.G. S.X.
0.58 7e-72 272 At3g26190 822220 CYP71B21 putative cytochrome P450 C.G. S.X.
0.42 9e-56 218 At3g26200 822221 CYP71B22 putative cytochrome P450 C.G. S.X.
0.10 9e-19 95 At5g02650 831848 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.14 4e-18 93 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max GmaAffx.60645.1.S1_at BI701603 - - 2e-4 At3g53300 CYP71B31 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig2231_s_at Contig2231 - - 1e-9 At1g64230 ubiquitin-conjugating enzyme, putative C.G. S.X.
0.02 9e-2 40 Oryza sativa OsAffx.22784.1.S1_at - - - 0 C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.216751.1.S1_s_at pmrna31735 hypothetical protein - 6e-1 At3g45150 TCP16 (TCP domain protein 16) C.G. S.X.
0.03 3e+0 34 Triticum aestivum Ta.5426.2.A1_a_at BJ282865 - - 3e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1619857_at CF568830 - - 7e-8 At2g23950 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 8e-2 38 Zea mays Zm.3881.1.A1_at AY105254.1 PCO115023 protein - 1e+0 At2g22940 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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