CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53250

Gene name auxin-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At3g53250 824492 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV S.X. H.G.
0.40 50.8 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At2g37030 818278 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO S.X. H.G.
0.02 0.4 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
228.3 100.0 GSM245491 2 hr Non-Stress IP RNA Rep 3 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
129.1 99.9 E-MEXP-1299-raw-cel-1519901784
101.0 99.9 GSM245471 2 hr Non-Stress IP RNA Rep 1 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
98.4 99.9 E-MEXP-1608-raw-cel-1620686981
75.0 99.9 E-MEXP-1304-raw-cel-1530618371
66.0 99.8 E-MEXP-1304-raw-cel-1530619805
64.8 99.8 E-MEXP-1304-raw-cel-1530619183
63.5 99.8 E-MEXP-883-raw-cel-1697709978
62.8 99.8 E-MEXP-1299-raw-cel-1519901856
61.0 99.8 E-MEXP-883-raw-cel-1697709922
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 4e-11 67 At2g37030 818278 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO C.G. S.X.
0.01 1e-2 40 At3g11130 820284 clathrin heavy chain, putative F:protein binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane, vacuole;MOFPB C.G. S.X.
0.01 2e-1 36 At1g70620 843399 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 6e-1 34 At5g23860 832451 TUB8 beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. C.G. S.X.
0.02 6e-1 34 At5g62700 836391 TUB3 encodes tubulin beta-2/beta-3 chain C.G. S.X.
0.02 6e-1 34 At5g62690 836390 TUB2 encodes tubulin beta-2/beta-3 chain C.G. S.X.
0.01 6e-1 34 At5g20710 832194 BGAL7 (beta-galactosidase 7) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PMBFOA C.G. S.X.
0.03 6e-1 34 At2g36870 818259 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Glycine max GmaAffx.75596.1.S1_at AW307212 - - 7e-1 At5g42232 - C.G. S.X.
0.05 5e+0 30 Hordeum vulgare HVSMEn0003C09f_at HVSMEn0003C09f - - 4e-8 At3g10860 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative C.G. S.X.
0.04 1e+0 34 Oryza sativa OsAffx.4553.1.S1_at - - - 0 C.G. S.X.
0.14 4e-3 42 Populus trichocarpa PtpAffx.213510.1.S1_at pmrna26410 SAUR family protein - 3e-11 At2g37030 auxin-responsive family protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.17966.1.S1_at CA626664 - - 2e-1 At5g58420 40S ribosomal protein S4 (RPS4D) C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1619279_at CF207445 - - 4e+0 At3g53250 auxin-responsive family protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.1960.1.A1_at AW566154 palmitoyltransferase swf1 - 4e-1 At3g04970 zinc finger (DHHC type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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