Gene omics information

Query gene ID At3g53180
Gene name catalytic/ glutamate-ammonia ligase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At3g53180824484catalytic/ glutamate-ammonia ligaseF:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMPS.X.H.G.
0.4050.8At1g09970837531LRR XI-23F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.3643.6At2g32240817784-F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAVS.X.H.G.
0.071.9At4g25030828606unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFS.X.H.G.
0.040.9At4g17070827415peptidyl-prolyl cis-trans isomeraseF:peptidyl-prolyl cis-trans isomerase activity;P:response to oxidative stress;C:unknown;PBMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
54.399.8GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
53.699.8GSM142836MG001_ATH1_A15-Torres-4N6GSE6176Impact of Type III effectors on plant defense responses
49.099.8GSM142834MG001_ATH1_A12-Torres-5N6GSE6176Impact of Type III effectors on plant defense responses
47.499.8GSM142833MG001_ATH1_A10-Torres-5N1GSE6176Impact of Type III effectors on plant defense responses
42.899.8GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responses
42.499.8GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responses
41.499.8GSM142835MG001_ATH1_A13-Torres-4N1GSE6176Impact of Type III effectors on plant defense responses
39.899.8GSM142838MG001_ATH1_A17-Torres-6N3GSE6176Impact of Type III effectors on plant defense responses
39.699.8GSM142851MG001_ATH1_A4-Torres-2N1GSE6176Impact of Type III effectors on plant defense responses
39.499.8GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-240At4g20320827780CTP synthase/ catalyticF:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:cellular_component unknown;OBMFAPC.G.S.X.
0.013e-138At5g64220836543calmodulin-binding proteinF:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:unknown;MOFBPVAC.G.S.X.
0.011e+036At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.011e+036At5g07840830677ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAC.G.S.X.
0.011e+036At3g53820824549zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion, intracellular;PMOC.G.S.X.
0.011e+036At3g09180820074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.011e+036At1g76580843991transcription factorF:transcription factor activity;P:regulation of transcription;C:plasma membrane;OMFPBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-965Glycine maxGmaAffx.90613.1.S1_atCF806338--3e-10At3g53180catalytic/ glutamate-ammonia ligaseC.G.S.X.
0.051e-1171Hordeum vulgareContig11034_atContig11034--9e-12At3g53180catalytic/ glutamate-ammonia ligaseC.G.S.X.
0.112e-1999Oryza sativaOs10g0456500AK066867.1-Glutamine synthetase I1e-19At3g53180catalytic/ glutamate-ammonia ligaseC.G.S.X.
0.061e-759Populus trichocarpaPtp.4113.1.S1_atBU836584hypothetical protein-3e-8At3g53180catalytic/ glutamate-ammonia ligaseC.G.S.X.
0.076e-1273Triticum aestivumTa.9416.1.S1_atBJ272928--4e-12At3g53180catalytic/ glutamate-ammonia ligaseC.G.S.X.
0.022e-240Vitis vinifera1621327_atCB971488hypothetical protein LOC100250889-1e+0At1g62990KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)C.G.S.X.
0.012e+034Zea maysZm.13912.1.A1_atCO526719SBP-domain protein 7-1e-3At2g42200SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009399The process by which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide.
LGO:0006542The chemical reactions and pathways resulting in the formation of glutamine, 2-amino-4-carbamoylbutanoic acid.
LGO:0006807The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00006Link to KaPPA-View 4Glutamine and glutamate metabolism/Nitrate assimilation
00118Link to KaPPA-View 4Glycolate pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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