CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g53110

Gene name LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g53110 824477 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. S.X. H.G.
0.41 52.4 At2g17390 816246 AKR2B (ANKYRIN REPEAT-CONTAINING 2B) Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. S.X. H.G.
0.38 46.7 At4g19210 827661 ATRLI2 member of RLI subfamily S.X. H.G.
0.36 43.6 At5g05780 830463 RPN8A (RP NON-ATPASE SUBUNIT 8A) Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity. S.X. H.G.
0.29 30.3 At3g19760 821513 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAV S.X. H.G.
0.27 26.2 At3g59990 825169 MAP2B (METHIONINE AMINOPEPTIDASE 2B) Encodes a MAP2 like methionine aminopeptidase S.X. H.G.
0.23 19.3 At1g20575 838646 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative F:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPV S.X. H.G.
0.22 17.5 At5g09900 830850 EMB2107 (EMBRYO DEFECTIVE 2107) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. S.X. H.G.
0.21 15.8 At4g30480 829171 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MOPFBAV S.X. H.G.
0.20 14.4 At4g39690 830124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 99.5 E-MEXP-1443-raw-cel-1581869803
14.5 99.4 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
14.3 99.4 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
12.8 99.3 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
12.8 99.3 E-MEXP-1797-raw-cel-1669768021
12.5 99.3 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
12.0 99.3 E-MEXP-1797-raw-cel-1669768075
11.8 99.3 E-MEXP-1797-raw-cel-1669767985
11.6 99.3 E-MEXP-1443-raw-cel-1581869745
11.2 99.2 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-5 50 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
0.02 5e-5 50 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV C.G. S.X.
0.02 5e-5 50 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P C.G. S.X.
0.02 2e-4 48 At1g29540 839831 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 8e-4 46 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB C.G. S.X.
0.02 8e-4 46 At4g19100 2745715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPV C.G. S.X.
0.01 8e-4 46 At2g23100 816842 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVA C.G. S.X.
0.03 8e-4 46 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA C.G. S.X.
0.01 3e-3 44 At5g05510 830434 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-5 50 Glycine max Gma.5847.3.S1_at BU765083 - - 3e-5 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.05 6e-6 52 Hordeum vulgare Contig5201_at Contig5201 - - 2e-5 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.05 4e-10 67 Oryza sativa Os03g0158200 CR290189 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 2e-10 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.17 9e-26 119 Populus trichocarpa Ptp.825.2.S1_at BU862707 - - 4e-26 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.07 3e-6 54 Triticum aestivum TaAffx.58695.1.S1_at CA617182 - - 8e-7 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.11 7e-14 77 Vitis vinifera 1614351_at BQ795124 - - 1e-13 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
0.05 1e-6 54 Zea mays Zm.6128.1.A1_at CK370955 Hypothetical protein LOC100193503 - 5e-6 At3g53110 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0016973 The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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