Gene omics information

Query gene ID At3g52870
Gene name calmodulin-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g52870824453calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBOS.X.H.G.
0.103.4At2g30070817558ATKT1 (POTASSIUM TRANSPORTER 1)Encodes a high affinity potassium transporter.S.X.H.G.
0.061.4At4g19140827652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.040.9At5g04550830334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBS.X.H.G.
0.030.6At3g05840819753ATSK12encodes a SHAGGY-like kinase involved in meristem organization.S.X.H.G.
0.010.2At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
112.299.9GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
59.599.8GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
50.799.8GSM311296Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
37.499.7GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
32.399.7GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
31.699.7GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
28.399.7GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
27.499.7GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.899.7GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
26.699.7GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cells
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.053e-654At3g13600820562calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.041e-242At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOC.G.S.X.
0.041e-242At2g26190817159calmodulin-binding family proteinF:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOBC.G.S.X.
0.012e-138At5g57010835803calmodulin-binding family proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
0.017e-136At3g15010820730RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:nucleolus;MBPOFVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-448Glycine maxGmaAffx.78280.1.S1_atBM528755--6e-5At3g52870calmodulin-binding family proteinC.G.S.X.
0.099e-548Hordeum vulgareContig18490_atContig18490--7e-5At3g52870calmodulin-binding family proteinC.G.S.X.
0.066e-654Oryza sativaOs12g0149900AK072203.1-IQ calmodulin-binding region domain containingprotein4e-3At2g26190calmodulin-binding family proteinC.G.S.X.
0.344e-31137Populus trichocarpaPtpAffx.219818.1.S1_atpmrna35946--2e-31At3g52870calmodulin-binding family proteinC.G.S.X.
0.151e-242Triticum aestivumTa.13245.1.S1_x_atBQ170197--1e-2At3g52870calmodulin-binding family proteinC.G.S.X.
0.023e+032Vitis vinifera1622549_atCA814078hypothetical protein LOC100256090-1e-16At5g16960NADP-dependent oxidoreductase, putativeC.G.S.X.
0.022e+130Zea maysZmAffx.619.1.A1_atAI715047--8e-1At3g30260AGL79 (AGAMOUS-LIKE 79)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage