CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g52870

Gene name calmodulin-binding family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g52870 824453 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO S.X. H.G.
0.10 3.4 At2g30070 817558 ATKT1 (POTASSIUM TRANSPORTER 1) Encodes a high affinity potassium transporter. S.X. H.G.
0.06 1.4 At4g19140 827652 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At5g04550 830334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB S.X. H.G.
0.03 0.6 At3g05840 819753 ATSK12 encodes a SHAGGY-like kinase involved in meristem organization. S.X. H.G.
0.01 0.2 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.2 99.9 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
59.5 99.8 GSM128654 Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
50.7 99.8 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
37.4 99.7 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
32.3 99.7 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
31.6 99.7 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
28.3 99.7 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
27.4 99.7 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.8 99.7 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
26.6 99.7 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-6 54 At3g13600 820562 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.04 1e-2 42 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO C.G. S.X.
0.04 1e-2 42 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB C.G. S.X.
0.01 2e-1 38 At5g57010 835803 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFBO C.G. S.X.
0.01 7e-1 36 At3g15010 820730 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:nucleolus;MBPOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Glycine max GmaAffx.78280.1.S1_at BM528755 - - 6e-5 At3g52870 calmodulin-binding family protein C.G. S.X.
0.09 9e-5 48 Hordeum vulgare Contig18490_at Contig18490 - - 7e-5 At3g52870 calmodulin-binding family protein C.G. S.X.
0.06 6e-6 54 Oryza sativa Os12g0149900 AK072203.1 - IQ calmodulin-binding region domain containingprotein 4e-3 At2g26190 calmodulin-binding family protein C.G. S.X.
0.34 4e-31 137 Populus trichocarpa PtpAffx.219818.1.S1_at pmrna35946 - - 2e-31 At3g52870 calmodulin-binding family protein C.G. S.X.
0.15 1e-2 42 Triticum aestivum Ta.13245.1.S1_x_at BQ170197 - - 1e-2 At3g52870 calmodulin-binding family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622549_at CA814078 hypothetical protein LOC100256090 - 1e-16 At5g16960 NADP-dependent oxidoreductase, putative C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.619.1.A1_at AI715047 - - 8e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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