CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g52690

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g52690 824435 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At3g19530 821489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At3g07710 819962 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At2g34370 818000 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM S.X. H.G.
0.22 17.5 At3g12720 820454 ATMYB67 (MYB DOMAIN PROTEIN 67) Member of the R2R3 factor gene family. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
854.3 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
524.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
409.7 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
378.3 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
267.4 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
259.8 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
233.9 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
233.2 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
176.5 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
162.5 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 4e-35 149 At3g55670 824733 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.27 4e-32 139 At4g00160 828180 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.36 4e-32 139 At3g52680 824434 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.31 2e-31 137 At3g52670 824433 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.32 6e-22 105 At3g51530 824316 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;P C.G. S.X.
0.24 2e-15 83 At3g49020 824063 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PM C.G. S.X.
0.16 3e-11 69 At4g13965 827031 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.11 3e-11 69 At3g26920 822308 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.1858.1.S1_at BG511708 DNA mismatch repair protein - 8e-1 At1g07960 ATPDIL5-1 (PDI-like 5-1) C.G. S.X.
0.03 6e-2 38 Hordeum vulgare HVSMEc0015H24f_at HVSMEc0015H24f - - 1e-86 Atcg00430 - C.G. S.X.
0.03 9e-1 36 Oryza sativa OsAffx.10213.1.A1_at - - - 0 C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.29029.1.S1_at DN501771 - - 8e-1 At1g10745 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.8765.1.A1_x_at BQ162344 - - 3e+0 At3g03405 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1615163_at CF414631 hypothetical protein LOC100248092 - 5e+0 At5g49440 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.841.1.A1_at AI770596 - - 1e+1 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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