Gene omics information

Query gene ID At3g52430
Gene name PAD4 (PHYTOALEXIN DEFICIENT 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2624.4At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.S.X.H.G.
0.6781.6At1g13340837894unknown proteinF:unknown;P:response to oxidative stress;C:unknown;MPFOS.X.H.G.
0.6781.6At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.S.X.H.G.
0.4050.8At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).S.X.H.G.
0.4050.8At5g60800836201heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;POMFBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
206.4100.0E-MEXP-546-raw-cel-863289586
203.8100.0GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
161.699.9GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
108.899.9GSM142844MG001_ATH1_A25-Torres-8N1GSE6176Impact of Type III effectors on plant defense responses
106.999.9GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
90.799.9GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
78.999.9GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
75.799.9GSM142846MG001_ATH1_A27-Torres-9N1GSE6176Impact of Type III effectors on plant defense responses
67.799.9GSM128677Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
62.299.8GSM244448Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At4g37820829938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;MOFBPVAC.G.S.X.
0.018e-136At5g130508311445-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)5-Formyltetrahydrofolate cycloligase (5-CHO-THF cycloligase - AT5G13050.1) regulates/influences under photorespiratory conditions the activity of another gene product, i.e. serine hydroxymethyltransferase (SHMT) due to accumulating amounts of 5-FormyltetrahydrofolateC.G.S.X.
0.028e-136At4g10970826698unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.018e-136At2g02340814765AtPP2-B8 (Phloem protein 2-B8)F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e-240Glycine maxHgAffx.10948.1.S1_atCB935506--2e-2At3g52430PAD4 (PHYTOALEXIN DEFICIENT 4)C.G.S.X.
0.012e+034Hordeum vulgareContig6919_atContig6919--1e+0At4g39130dehydrin family proteinC.G.S.X.
0.026e+034Oryza sativaOs01g0916700NM_189945.1-Conserved hypothetical protein5e-2At5g60490FLA12C.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.209293.1.S1_s_atpmrna18366fasciclin-like domain-containing protein-8e-4At3g55820-C.G.S.X.
0.025e-240Triticum aestivumTa.7362.2.S1_a_atCA611017--4e+0At3g10620ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)C.G.S.X.
0.026e-238Vitis vinifera1610899_atCA818813hypothetical protein LOC100265829-6e-34At3g20390endoribonuclease L-PSP family proteinC.G.S.X.
0.013e-136Zea maysZm.19304.1.A1_atCO525321hypothetical protein LOC100192965-3e-1At1g55230unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010618The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts.
XGO:0001666A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
XGO:0010310Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide.
XGO:0002213A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism.
XGO:0009627The salicylic acid mediated response to a pathogen which confers broad spectrum resistance.
XGO:0031348Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.
XGO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
XGO:0009625A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect.
XGO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.
XGO:0009862The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance.
XGO:0010150The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.
CGO:0006629The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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