Gene omics information

Query gene ID At3g52400
Gene name SYP122 (SYNTAXIN OF PLANTS 122)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayS.X.H.G.
0.8190.4At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAS.X.H.G.
0.7184.2At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.6378.1At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBS.X.H.G.
0.6378.1At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.5873.8At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.5673.0At4g12720826884NUDT7Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.S.X.H.G.
0.5368.6At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.5267.4At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.5065.3At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
72.199.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
71.499.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
69.899.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.229e-1581At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.C.G.S.X.
0.049e-961At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyC.G.S.X.
0.021e-138At2g27780817325-F:molecular_function unknown;P:transcription;C:nucleus;OMPBFAVC.G.S.X.
0.021e-138At2g13640815849Golgi GDP mannose transporter (GONST1)F:unknown;P:transcription;C:nucleus;OMBPFVAC.G.S.X.
0.041e-138At2g18260816342SYP112 (SYNTAXIN OF PLANTS 112)member of SYP11 Gene FamilyC.G.S.X.
0.011e-138At1g29470839823dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-344Glycine maxGmaAffx.25145.1.A1_atAW830552--2e-23At1g08560SYP111 (SYNTAXIN OF PLANTS 111)C.G.S.X.
0.031e+034Hordeum vulgareContig13327_atContig13327--6e-3At1g05300ZIP5C.G.S.X.
0.023e-138Oryza sativaOs07g05577009635.m03680-Conserved hypothetical protein8e+0At3g20450-C.G.S.X.
0.215e-1169Populus trichocarpaPtpAffx.213392.1.S1_atpmrna26200hypothetical protein-3e-11At3g52400SYP122 (SYNTAXIN OF PLANTS 122)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.80518.1.S1_atCA695807--1e-2At1g54215proline-rich family proteinC.G.S.X.
0.032e-446Vitis vinifera1608365_atCF205987.1hypothetical protein LOC100265818-4e-4At3g52400SYP122 (SYNTAXIN OF PLANTS 122)C.G.S.X.
0.026e-238Zea maysZm.10869.1.S1_atBM074344--3e-1At3g07510unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0006612The process of directing proteins towards a membrane, usually using signals contained within the protein.
XGO:0009863A series of molecular signals mediated by salicylic acid.
XGO:0009867A series of molecular signals mediated by jasmonic acid.
XGO:0010363Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.
XGO:0043069Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
XGO:0051245Any process that stops, prevents, or reduces the rate of the cellular defense response.
SGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
SGO:0006944The joining of two lipid bilayers to form a single membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
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