CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g52400

Gene name SYP122 (SYNTAXIN OF PLANTS 122)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At3g52400 824405 SYP122 (SYNTAXIN OF PLANTS 122) syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway S.X. H.G.
0.81 90.4 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
0.71 84.2 At4g39640 830118 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast. S.X. H.G.
0.63 78.1 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
0.63 78.1 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.58 73.8 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO S.X. H.G.
0.56 73.0 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. S.X. H.G.
0.53 68.6 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.52 67.4 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.50 65.3 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
129.6 99.9 E-MEXP-807-raw-cel-1173273252
117.2 99.9 E-MEXP-807-raw-cel-1173273170
112.4 99.9 E-MEXP-807-raw-cel-1173273144
83.6 99.9 E-MEXP-807-raw-cel-1173273196
82.2 99.9 E-MEXP-807-raw-cel-1173273223
77.6 99.9 E-MEXP-807-raw-cel-1173273116
72.1 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
71.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
71.3 99.9 E-MEXP-807-raw-cel-1173273060
69.8 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 9e-15 81 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. C.G. S.X.
0.04 9e-9 61 At1g08560 837378 SYP111 (SYNTAXIN OF PLANTS 111) member of SYP11 Gene Family C.G. S.X.
0.02 1e-1 38 At2g27780 817325 - F:molecular_function unknown;P:transcription;C:nucleus;OMPBFAV C.G. S.X.
0.02 1e-1 38 At2g13640 815849 Golgi GDP mannose transporter (GONST1) F:unknown;P:transcription;C:nucleus;OMBPFVA C.G. S.X.
0.04 1e-1 38 At2g18260 816342 SYP112 (SYNTAXIN OF PLANTS 112) member of SYP11 Gene Family C.G. S.X.
0.01 1e-1 38 At1g29470 839823 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Glycine max GmaAffx.25145.1.A1_at AW830552 - - 2e-23 At1g08560 SYP111 (SYNTAXIN OF PLANTS 111) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig13327_at Contig13327 - - 6e-3 At1g05300 ZIP5 C.G. S.X.
0.02 3e-1 38 Oryza sativa Os07g0557700 9635.m03680 - Conserved hypothetical protein 8e+0 At3g20450 - C.G. S.X.
0.21 5e-11 69 Populus trichocarpa PtpAffx.213392.1.S1_at pmrna26200 hypothetical protein - 3e-11 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.80518.1.S1_at CA695807 - - 1e-2 At1g54215 proline-rich family protein C.G. S.X.
0.03 2e-4 46 Vitis vinifera 1608365_at CF205987.1 hypothetical protein LOC100265818 - 4e-4 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) C.G. S.X.
0.02 6e-2 38 Zea mays Zm.10869.1.S1_at BM074344 - - 3e-1 At3g07510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
X GO:0006612 The process of directing proteins towards a membrane, usually using signals contained within the protein.
X GO:0009863 A series of molecular signals mediated by salicylic acid.
X GO:0009867 A series of molecular signals mediated by jasmonic acid.
X GO:0010363 Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response.
X GO:0043069 Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
X GO:0051245 Any process that stops, prevents, or reduces the rate of the cellular defense response.
S GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
S GO:0006944 The joining of two lipid bilayers to form a single membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04130 SNARE interactions in vesicular transport
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