CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g52370

Gene name FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At3g52370 824402 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAV S.X. H.G.
0.50 65.3 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. S.X. H.G.
0.40 50.8 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA S.X. H.G.
0.40 50.8 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF S.X. H.G.
0.25 22.6 At5g61340 836255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
74.4 99.9 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
69.7 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
65.9 99.8 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
61.6 99.8 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
57.7 99.8 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
53.2 99.8 GSM131173 AtGen_D-5_1-BL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
52.0 99.8 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
52.0 99.8 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
49.7 99.8 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
44.9 99.8 E-ATMX-1-raw-cel-1112746209
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 1e-73 278 At2g35860 818159 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) F:unknown;P:cell adhesion;C:endomembrane system;BMPOFAV C.G. S.X.
0.51 3e-40 167 At5g06390 830527 FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) F:molecular_function unknown;P:cell adhesion;C:vacuole;BPOMFAV C.G. S.X.
0.46 6e-32 139 At3g11700 820342 FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOM C.G. S.X.
0.01 4e-2 40 At1g36990 840609 unknown protein F:unknown;P:unknown;C:chloroplast;OMBFPV C.G. S.X.
0.03 2e-1 38 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). C.G. S.X.
0.02 2e-1 38 At2g22410 816772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.02 2e-1 38 At1g13290 837889 DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development. C.G. S.X.
0.01 6e-1 36 At5g62390 836360 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-31 137 Glycine max GmaAffx.85883.1.S1_at CA935724 - - 3e-19 At5g06390 FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) C.G. S.X.
0.03 1e-3 44 Hordeum vulgare Contig5827_at Contig5827 - - 7e-4 At2g35860 FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) C.G. S.X.
0.03 8e-2 40 Oryza sativa OsAffx.19902.1.S1_at - - - 0 C.G. S.X.
0.23 2e-26 121 Populus trichocarpa PtpAffx.358.1.S1_at CV239249 - - 2e-26 At3g52370 FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.101059.2.S1_at CA630164 - - 1e-3 At2g26930 ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE) C.G. S.X.
0.13 1e-8 59 Vitis vinifera 1617165_at CD721075 hypothetical protein LOC100254768 - 9e-24 At5g06390 FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) C.G. S.X.
0.01 1e+0 34 Zea mays ZmAffx.11.1.S1_at U14598.1 - - 5e-1 At3g22275 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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