CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51910

Gene name AT-HSFA7A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.35 41.6 At3g51910 824354 AT-HSFA7A member of Heat Stress Transcription Factor (Hsf) family S.X. H.G.
0.27 26.2 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.27 26.2 At1g07350 837246 transformer serine/arginine-rich ribonucleoprotein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:unknown;MPFOBVA S.X. H.G.
0.27 26.2 At2g25140 817052 CLPB4 (CASEIN LYTIC PROTEINASE B4) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. S.X. H.G.
0.27 26.2 At4g33420 829479 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM S.X. H.G.
0.25 22.6 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.19 12.7 At5g35320 833486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.17 10.2 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF S.X. H.G.
0.14 6.8 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
0.10 3.4 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
241.2 100.0 GSM131450 AtGen_6-9222_Heatstress-Roots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
224.6 100.0 GSM131449 AtGen_6-9221_Heatstress-Roots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
118.2 99.9 GSM131448 AtGen_6-9212_Heatstress-Shoots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
103.0 99.9 GSM131447 AtGen_6-9211_Heatstress-Shoots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
94.7 99.9 GSM131559 ATGE_9_B GSE5631 AtGenExpress: Developmental series (roots)
93.0 99.9 GSM131558 ATGE_9_A GSE5631 AtGenExpress: Developmental series (roots)
85.2 99.9 GSM131445 AtGen_6-9121_Heatstress-Roots-0.5h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
84.8 99.9 GSM131446 AtGen_6-9122_Heatstress-Roots-0.5h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
81.1 99.9 GSM131560 ATGE_9_C GSE5631 AtGenExpress: Developmental series (roots)
46.4 99.8 GSM133723 McCormac_1-1_wildtype-NFtreated_Rep1_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 3e-20 99 At2g26150 817155 ATHSFA2 member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. C.G. S.X.
0.32 2e-15 83 At3g63350 825510 AT-HSFA7B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.05 5e-10 65 At3g02990 821162 ATHSFA1E member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.12 3e-8 59 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.08 2e-6 54 At5g43840 834406 AT-HSFA6A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.03 7e-6 52 At1g46264 841110 AT-HSFB4 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.06 3e-5 50 At5g16820 831545 HSF3 (HEAT SHOCK FACTOR 3) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-7 57 Glycine max GmaAffx.16473.5.S1_x_at BI471764 - - 1e-24 At3g02990 ATHSFA1E C.G. S.X.
0.03 5e-2 38 Hordeum vulgare Contig16430_at Contig16430 - - 2e-4 At1g62240 unknown protein C.G. S.X.
0.06 5e-2 40 Oryza sativa OsAffx.13015.1.S1_at - - - 0 C.G. S.X.
0.21 1e-11 71 Populus trichocarpa PtpAffx.201706.1.S1_at pmrna3397 hypothetical protein - 8e-12 At3g51910 AT-HSFA7A C.G. S.X.
0.04 4e-1 36 Triticum aestivum TaAffx.8877.1.S1_at CA618656 - - 1e+1 At3g27270 - C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1617455_at CF415586 hypothetical protein LOC100266938 - 6e-2 At4g10810 unknown protein C.G. S.X.
0.03 4e-2 38 Zea mays Zm.17055.1.S1_at CF972499 - - 2e-2 At1g12665 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0032268 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell.
X GO:0009644 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus.
X GO:0009408 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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