CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51895

Gene name SULTR3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At3g51895 824353 SULTR3 Encodes a sulfate transporter. S.X. H.G.
0.50 65.3 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. S.X. H.G.
0.33 38.1 At1g21460 838744 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO S.X. H.G.
0.29 30.3 At1g68570 843186 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF S.X. H.G.
0.07 1.9 At1g27360 839625 squamosa promoter-binding protein-like 11 (SPL11) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P S.X. H.G.
0.01 0.2 At4g32770 829413 VTE1 (VITAMIN E DEFICIENT 1) Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
56.1 99.8 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
45.0 99.8 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.6 99.8 GSM131275 AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
42.0 99.8 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
40.0 99.8 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
38.6 99.8 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
38.5 99.8 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
37.8 99.8 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
35.8 99.7 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
35.6 99.7 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 4e-46 186 At4g02700 828201 SULTR3 F:sulfate transmembrane transporter activity;P:sulfate transport, transport;C:integral to membrane, membrane;BOMPFA C.G. S.X.
0.09 2e-14 81 At5g19600 832080 SULTR3 Encodes sulfate transporter Sultr3;5. C.G. S.X.
0.09 3e-4 48 At1g23090 838917 AST91 (SULFATE TRANSPORTER 91) Encodes AST91 mRNA for sulfate transporter. C.G. S.X.
0.06 1e-3 46 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. C.G. S.X.
0.05 2e-2 42 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. C.G. S.X.
0.02 6e-2 40 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. C.G. S.X.
0.01 2e-1 38 At5g24240 832491 phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:protein modification process;C:peroxisome;MPOFVB C.G. S.X.
0.01 2e-1 38 At5g27240 832782 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-7 57 Glycine max GmaAffx.53845.1.S1_at BG406552 - - 1e-7 At3g51895 SULTR3 C.G. S.X.
0.10 2e-12 73 Hordeum vulgare Contig7074_s_at Contig7074 - - 5e-18 At1g23090 AST91 (SULFATE TRANSPORTER 91) C.G. S.X.
0.17 7e-28 127 Oryza sativa Os03g0161200 AK066932.1 - Sulfate transporter 3.1 (AST12) (AtST1) 4e-28 At3g51895 SULTR3 C.G. S.X.
0.36 8e-64 246 Populus trichocarpa PtpAffx.201716.1.S1_at pmrna3410 sulfate/bicarbonate/oxalate exchanger and transporter sat-1 - 5e-64 At3g51895 SULTR3 C.G. S.X.
0.12 1e-15 85 Triticum aestivum TaAffx.119992.1.S1_at CA655860 - - 4e-16 At3g51895 SULTR3 C.G. S.X.
0.16 2e-26 119 Vitis vinifera 1611159_at CF512047 hypothetical protein LOC100254481 - 5e-26 At3g51895 SULTR3 C.G. S.X.
0.04 7e-3 42 Zea mays Zm.10614.1.A1_at AY105934.1 - - 5e-12 At1g23090 AST91 (SULFATE TRANSPORTER 91) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008272 The directed movement of sulfate into, out of, within or between cells.
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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