CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51810

Gene name EM1 (LATE EMBRYOGENESIS ABUNDANT 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At3g51810 824344 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. S.X. H.G.
0.40 50.8 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.35 41.6 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV S.X. H.G.
0.33 38.1 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
493.6 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
395.9 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
296.2 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
258.7 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
225.1 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
222.2 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
221.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
192.1 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
188.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
179.1 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 1e-15 83 At2g40170 818608 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation. C.G. S.X.
0.02 2e-1 36 At5g43360 834354 PHT3 (PHOSPHATE TRANSPORTER 3) phosphate transporter C.G. S.X.
0.02 9e-1 34 At5g60970 836218 TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5) TCP gene involved in heterochronic control of leaf differentiation. C.G. S.X.
0.01 9e-1 34 At5g40380 834036 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.05 9e-1 34 At4g26810 828788 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFOM C.G. S.X.
0.02 9e-1 34 At4g30850 829209 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors C.G. S.X.
0.01 9e-1 34 At3g20010 821539 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 6 functions;P:unknown;C:unknown;MBFOPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 2e-15 83 Glycine max GmaAffx.34765.1.S1_at BE823831 - - 2e-15 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.06 7e-6 50 Hordeum vulgare Contig1838_at Contig1838 - - 5e-5 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.09 7e-3 42 Oryza sativa Os05g0349800 AK063677.1 - Embryonic abundant protein 1 7e-3 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) C.G. S.X.
0.05 3e-1 36 Populus trichocarpa PtpAffx.200506.1.S1_s_at pmrna1025 hypothetical protein - 2e-36 At3g15550 unknown protein C.G. S.X.
0.04 1e-3 44 Triticum aestivum Ta.2798.1.S1_x_at BJ290016 Em protein (AA 1-93) - 1e+0 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) C.G. S.X.
0.06 7e-2 36 Vitis vinifera 1620890_at CB918837 hypothetical protein LOC100263962 - 2e-1 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.8230.1.A1_at CF025942 hypothetical protein LOC100191834 - 3e+0 At5g15790 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
S GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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