Gene omics information

Query gene ID At3g51810
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.S.X.H.G.
0.4050.8At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3643.6At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.3541.6At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVS.X.H.G.
0.3338.1At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
493.6100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
395.9100.0GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
296.2100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
258.7100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
225.1100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
222.2100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
221.2100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
192.1100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
188.9100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
179.1100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.371e-1583At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.C.G.S.X.
0.022e-136At5g43360834354PHT3 (PHOSPHATE TRANSPORTER 3)phosphate transporterC.G.S.X.
0.029e-134At5g60970836218TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5)TCP gene involved in heterochronic control of leaf differentiation.C.G.S.X.
0.019e-134At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.059e-134At4g26810828788SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFOMC.G.S.X.
0.029e-134At4g30850829209HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptorsC.G.S.X.
0.019e-134At3g20010821539SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBFOPVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.332e-1583Glycine maxGmaAffx.34765.1.S1_atBE823831--2e-15At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)C.G.S.X.
0.067e-650Hordeum vulgareContig1838_atContig1838--5e-5At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)C.G.S.X.
0.097e-342Oryza sativaOs05g0349800AK063677.1-Embryonic abundant protein 17e-3At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)C.G.S.X.
0.053e-136Populus trichocarpaPtpAffx.200506.1.S1_s_atpmrna1025hypothetical protein-2e-36At3g15550unknown proteinC.G.S.X.
0.041e-344Triticum aestivumTa.2798.1.S1_x_atBJ290016Em protein (AA 1-93)-1e+0At2g40170GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)C.G.S.X.
0.067e-236Vitis vinifera1620890_atCB918837hypothetical protein LOC100263962-2e-1At2g40170GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)C.G.S.X.
0.042e+032Zea maysZm.8230.1.A1_atCF025942hypothetical protein LOC100191834-3e+0At5g15790zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
SGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
SGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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