CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51760

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g51760 824339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At1g78530 844189 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.80 89.8 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF S.X. H.G.
0.75 86.9 At2g46070 819215 MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants. S.X. H.G.
0.64 78.9 At2g20875 816621 EPF1 (EPIDERMAL PATTERNING FACTOR 1) F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P S.X. H.G.
0.64 78.9 At1g11340 837676 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.61 76.7 At3g55500 824715 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. S.X. H.G.
0.60 75.7 At2g40260 818618 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF S.X. H.G.
0.59 74.7 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF S.X. H.G.
0.59 74.7 At3g17070 820964 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1953.2 100.0 E-MEXP-1443-raw-cel-1581869515
1319.6 100.0 E-MEXP-1443-raw-cel-1581869573
696.5 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
66.9 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.5 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
44.2 99.8 E-MEXP-1443-raw-cel-1581869803
34.5 99.7 E-MEXP-1443-raw-cel-1581869745
32.9 99.7 GSM74904 ice1_3H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
27.5 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.7 99.6 GSM74908 ice1_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At5g24760 832545 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV C.G. S.X.
0.02 4e-1 36 At5g15330 831385 SPX4 (SPX DOMAIN GENE 4) F:molecular_function unknown;P:cellular response to phosphate starvation;C:cellular_component unknown;FMPO C.G. S.X.
0.01 4e-1 36 At3g28040 822428 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 4e-1 36 At1g25490 839135 RCN1 (ROOTS CURL IN NPA) One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem C.G. S.X.
0.02 2e+0 34 At5g63260 836446 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFO C.G. S.X.
0.02 2e+0 34 At5g18470 831965 curculin-like (mannose-binding) lectin family protein F:sugar binding;P:biological_process unknown;C:plant-type cell wall;P C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max Gma.12056.1.S1_at BG653523 - - 1e-1 At3g51760 unknown protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEk0014B12r2_at HVSMEk0014B12r2 - - 8e-1 At1g08310 esterase/lipase/thioesterase family protein C.G. S.X.
0.03 8e-1 36 Oryza sativa Os04g0335200 9632.m02486 - - 6e-1 At3g10985 SAG20 (SENESCENCE ASSOCIATED GENE 20) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.215804.1.S1_at pmrna30204 hypothetical protein - 1e+0 At5g09461 CPuORF43 (Conserved peptide upstream open reading frame 43) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.23936.1.S1_x_at CA727991 - - 5e-1 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1619119_at CF511812 hypothetical protein LOC100252541 - 9e-2 At5g23060 CaS (Calcium sensing receptor) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.5984.1.A1_at AI666042 - - 1e+0 At5g53830 VQ motif-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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