CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51750

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At3g51750 824338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At5g14690 831321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM S.X. H.G.
0.80 89.8 At3g62320 825405 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.53 68.6 At4g31760 829304 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.50 65.3 At2g30560 817605 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA S.X. H.G.
0.44 57.2 At3g48670 824027 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.43 55.3 At1g67590 843080 remorin family protein F:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
395.5 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
332.1 100.0 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
208.0 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
157.3 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
145.7 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.5 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
80.3 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.2 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 6e-1 34 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. C.G. S.X.
0.03 6e-1 34 At2g26940 817235 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOF C.G. S.X.
0.01 6e-1 34 At1g76810 844015 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 6e-1 34 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 6e-1 34 At1g29230 839797 CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18). C.G. S.X.
0.03 6e-1 34 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. C.G. S.X.
0.02 3e+0 32 At5g53770 835458 nucleotidyltransferase family protein F:nucleic acid binding, nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPB C.G. S.X.
0.03 3e+0 32 At5g67520 836888 adenylylsulfate kinase, putative F:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-1 34 Glycine max Gma.3990.1.S1_s_at BQ453423 - - 2e-1 At2g22300 SR1 (SIGNAL RESPONSIVE 1) C.G. S.X.
0.04 1e+0 32 Hordeum vulgare Contig14625_at Contig14625 - - 2e-2 At3g06020 unknown protein C.G. S.X.
0.04 5e+0 32 Oryza sativa Os09g0347000 9637.m01522 - - 3e-1 At1g54680 unknown protein C.G. S.X.
0.05 9e-1 34 Populus trichocarpa Ptp.6076.1.S1_s_at BI128267 hypothetical protein - 8e-4 At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) C.G. S.X.
0.04 7e-1 34 Triticum aestivum TaAffx.119760.1.S1_at BJ259531 - - 1e+0 At3g51750 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1621422_at CF568979 - - 3e+0 At4g10720 ankyrin repeat family protein C.G. S.X.
0.04 3e-1 34 Zea mays Zm.18924.1.A1_at CO532713 hypothetical protein LOC100280163 - 1e-2 At3g15040 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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