CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51740

Gene name IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At3g51740 824337 IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. S.X. H.G.
0.85 92.4 At3g51280 824291 male sterility MS5, putative F:binding;P:unknown;C:cellular_component unknown;OBPAF S.X. H.G.
0.83 91.4 At3g15560 - - - S.X. H.G.
0.82 90.9 At4g26660 828773 - F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV S.X. H.G.
0.77 88.0 At5g55520 835646 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.71 84.2 At4g28230 828938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.69 82.9 At5g67270 836862 ATEB1C (microtubule end binding protein 1) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. S.X. H.G.
0.64 78.9 At3g51720 824335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV S.X. H.G.
0.63 78.1 At4g23800 828480 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV S.X. H.G.
0.61 76.7 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
229.2 100.0 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
176.4 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
166.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
165.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
161.3 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
154.6 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
152.7 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
142.6 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
134.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
133.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 9e-11 69 At3g56100 824776 MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE) Protein kinase expressed in meristematic cells. Phosphorylates AGL24. C.G. S.X.
0.02 2e-8 61 At3g02880 821198 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall;PMOBFVA C.G. S.X.
0.02 1e-3 46 At1g68400 843169 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 2e-2 42 At5g42870 834298 lipin family protein F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP C.G. S.X.
0.01 2e-2 42 At5g57210 835827 microtubule-associated protein-related F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFP C.G. S.X.
0.01 3e-1 38 At5g37630 833741 EMB2656 (EMBRYO DEFECTIVE 2656) F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 3e-1 38 At4g23740 828474 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 3e-1 38 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV C.G. S.X.
0.01 3e-1 38 At1g34110 840310 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-9 63 Glycine max Gma.8444.1.S1_at AF506517.1 receptor-like kinase RHG1 - 4e-22 At3g56100 MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE) C.G. S.X.
0.01 6e-1 36 Hordeum vulgare Contig25306_at Contig25306 - - 1e-3 At4g00970 protein kinase family protein C.G. S.X.
0.02 2e-1 40 Oryza sativa Os.47316.1.S1_at - - - 0 C.G. S.X.
0.17 9e-24 113 Populus trichocarpa PtpAffx.206332.1.S1_at pmrna12571 hypothetical protein - 1e-9 At3g56100 MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE) C.G. S.X.
0.05 9e-5 50 Triticum aestivum TaAffx.64399.1.S1_at BJ301208 - - 2e-5 At3g51740 IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1618771_s_at CD715283 hypothetical protein LOC100262843 - 3e-4 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.01 1e-1 38 Zea mays Zm.8772.1.A1_at CF018678 hypothetical protein LOC100192757 - 2e-38 At5g54080 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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