CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51660

Gene name macrophage migration inhibitory factor family protein / MIF family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At3g51660 824329 macrophage migration inhibitory factor family protein / MIF family protein F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB S.X. H.G.
0.50 65.3 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO S.X. H.G.
0.33 38.1 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.33 38.1 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.33 38.1 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.3 100.0 E-MEXP-1443-raw-cel-1581869632
116.4 99.9 E-MEXP-1443-raw-cel-1581869921
103.5 99.9 E-MEXP-1443-raw-cel-1581869688
86.5 99.9 E-MEXP-1443-raw-cel-1581869863
62.3 99.8 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
41.6 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
39.2 99.8 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
36.3 99.7 E-MEXP-546-raw-cel-863289532
36.2 99.7 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
33.3 99.7 E-MEXP-546-raw-cel-863289424
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 38 Atcg01050 - - Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. C.G. S.X.
0.01 4e-2 38 At2g31400 817698 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;POMFBA C.G. S.X.
0.02 6e-1 34 At5g25070 832578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 6e-1 34 At5g16700 831531 glycosyl hydrolase family 5 protein / cellulase family protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPFOA C.G. S.X.
0.05 6e-1 34 At5g40590 834057 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POF C.G. S.X.
0.01 6e-1 34 At4g30710 829194 unknown protein F:unknown;P:biological_process unknown;C:unknown;OMFBPV C.G. S.X.
0.01 6e-1 34 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 3e+0 32 At5g02770 831253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-3 44 Glycine max GmaAffx.87421.1.S1_at BI785961 - - 1e-3 At3g51660 macrophage migration inhibitory factor family protein / MIF family protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare Contig4879_at Contig4879 - - 6e-21 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.04 3e-1 36 Oryza sativa Os.37783.2.S1_x_at - - - 0 C.G. S.X.
0.11 1e-21 103 Populus trichocarpa Ptp.6680.1.S1_at CK094754 hypothetical protein - 2e-21 At3g51660 macrophage migration inhibitory factor family protein / MIF family protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.112696.1.S1_at CA621783 - - 2e-1 At5g02770 unknown protein C.G. S.X.
0.04 1e+1 28 Vitis vinifera 1621435_s_at CF515294 hypothetical protein LOC100253802 - 2e+0 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) C.G. S.X.
0.03 4e+0 30 Zea mays Zm.16639.1.A1_at CF635693 Hypothetical protein LOC100191827 - 2e-3 At4g10840 kinesin light chain-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006954 The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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