CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51610

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g51610 824324 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO S.X. H.G.
0.73 85.5 At5g10780 830945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.61 76.7 At5g51510 835225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.57 73.8 At3g15660 820809 GRX4 (GLUTAREDOXIN 4) F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFA S.X. H.G.
0.29 30.3 At4g12590 826872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 99.4 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
10.9 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.3 99.1 GSM133314 RIKEN-LI2B GSE5701 AtGenExpress: Basic hormone treatment of seeds
8.1 98.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
8.0 98.9 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
8.0 98.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
7.9 98.9 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
7.5 98.8 GSM133305 RIKEN-NAKABAYASHI2A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
7.2 98.8 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.9 98.7 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At2g47360 819349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 3e-1 36 At1g17450 838317 - F:molecular_function unknown;P:unknown;C:unknown;POB C.G. S.X.
0.01 1e+0 34 At5g04360 830315 ATLDA (LIMIT DEXTRINASE) Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. C.G. S.X.
0.01 1e+0 34 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF C.G. S.X.
0.01 1e+0 34 At2g32780 817839 UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1) F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPBV C.G. S.X.
0.03 1e+0 34 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-6 52 Glycine max GmaAffx.92865.1.S1_at CF806079 - - 6e-6 At3g51610 unknown protein C.G. S.X.
0.07 1e-8 59 Hordeum vulgare Contig7658_at Contig7658 - - 4e-8 At3g51610 unknown protein C.G. S.X.
0.08 7e-1 36 Oryza sativa Os05g0168400 CR283498 - Conserved hypothetical protein 3e-1 At3g11400 eukaryotic translation initiation factor 3G / eIF3g C.G. S.X.
0.38 8e-9 61 Populus trichocarpa Ptp.3821.1.S1_s_at CV245704 hypothetical protein - 7e-9 At3g51610 unknown protein C.G. S.X.
0.07 6e-6 52 Triticum aestivum TaAffx.86629.1.S1_at AJ612548 - - 1e-5 At3g51610 unknown protein C.G. S.X.
0.25 2e-3 42 Vitis vinifera 1619129_at CF215433 hypothetical protein LOC100249981 - 4e-3 At3g51610 unknown protein C.G. S.X.
0.09 7e-10 63 Zea mays Zm.14290.1.S1_at CD998001 hypothetical protein LOC100278212 - 2e-9 At3g51610 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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