CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51590

Gene name LTP12 (LIPID TRANSFER PROTEIN 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At3g51590 824322 LTP12 (LIPID TRANSFER PROTEIN 12) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.40 50.8 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.33 38.1 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. S.X. H.G.
0.27 26.2 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.27 26.2 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
154.1 99.9 E-MEXP-1592-raw-cel-1617526848
131.3 99.9 E-MEXP-1592-raw-cel-1617526912
128.2 99.9 E-MEXP-1592-raw-cel-1617526880
122.9 99.9 E-MEXP-1592-raw-cel-1617526944
116.4 99.9 GSM62694 Columbia flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
108.7 99.9 GSM47019 Ler 9 GSE2473 Small RNA biogenesis mutants
101.3 99.9 E-MEXP-1592-raw-cel-1617526976
91.5 99.9 GSM62698 arf6/arf6 ARF8/arf8 flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
89.9 99.9 GSM253199 Nontransgenic(ga1-3rgargl2)-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
89.9 99.9 GSM253201 Nontransgenic(ga1-3rgargl2)-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 3e+0 32 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV C.G. S.X.
0.04 1e+1 30 At4g15715 827249 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+1 30 At4g30950 829220 FAD6 (FATTY ACID DESATURASE 6) Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition. C.G. S.X.
0.02 1e+1 30 At3g25900 822186 HMT-1 F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFA C.G. S.X.
0.01 1e+1 30 At3g19370 821471 - F:unknown;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.02 1e+1 30 At3g01890 820093 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPBO C.G. S.X.
0.01 1e+1 30 At3g59570 825126 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Glycine max PsAffx.C52000068_at PsAffx.C52000068 - - 5e+0 At3g51590 LTP12 (LIPID TRANSFER PROTEIN 12) C.G. S.X.
0.04 2e-2 38 Hordeum vulgare Contig19716_at Contig19716 - - 2e-6 At3g01890 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.05 5e+0 32 Oryza sativa Os.16308.1.S1_at - - - 0 C.G. S.X.
0.03 4e+0 32 Populus trichocarpa PtpAffx.220488.1.S1_at pmrna36881 - - 4e+0 At3g51590 LTP12 (LIPID TRANSFER PROTEIN 12) C.G. S.X.
0.06 3e+0 32 Triticum aestivum Ta.9742.2.A1_at CD453928 - - 5e+0 At3g51590 LTP12 (LIPID TRANSFER PROTEIN 12) C.G. S.X.
0.04 5e-2 36 Vitis vinifera 1618030_at CA809596 - - 5e-6 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.04 2e+1 28 Zea mays ZmAffx.71.1.A1_at AI665169 hypothetical protein LOC100274794 - 3e+0 At1g50640 ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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