Gene omics information

Query gene ID At3g51590
Gene name LTP12 (LIPID TRANSFER PROTEIN 12)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1710.2At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.S.X.H.G.
0.4050.8At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.3338.1At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.S.X.H.G.
0.2726.2At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFS.X.H.G.
0.2726.2At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
154.199.9E-MEXP-1592-raw-cel-1617526848
131.399.9E-MEXP-1592-raw-cel-1617526912
128.299.9E-MEXP-1592-raw-cel-1617526880
122.999.9E-MEXP-1592-raw-cel-1617526944
116.499.9GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
108.799.9GSM47019Ler 9GSE2473Small RNA biogenesis mutants
101.399.9E-MEXP-1592-raw-cel-1617526976
91.599.9GSM62698arf6/arf6 ARF8/arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
89.999.9GSM253199Nontransgenic(ga1-3rgargl2)-DEX-REP1GSE10019Identification of RGA downstream genes by using steroid-inducible system
89.999.9GSM253201Nontransgenic(ga1-3rgargl2)-DEX-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible system
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.043e+032At3g22930821865calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBVC.G.S.X.
0.041e+130At4g15715827249-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e+130At4g30950829220FAD6 (FATTY ACID DESATURASE 6)Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.C.G.S.X.
0.021e+130At3g25900822186HMT-1F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFAC.G.S.X.
0.011e+130At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVC.G.S.X.
0.021e+130At3g01890820093SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPBOC.G.S.X.
0.011e+130At3g59570825126RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MFOPC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e+032Glycine maxPsAffx.C52000068_atPsAffx.C52000068--5e+0At3g51590LTP12 (LIPID TRANSFER PROTEIN 12)C.G.S.X.
0.042e-238Hordeum vulgareContig19716_atContig19716--2e-6At3g01890SWIB complex BAF60b domain-containing proteinC.G.S.X.
0.055e+032Oryza sativaOs.16308.1.S1_at---0C.G.S.X.
0.034e+032Populus trichocarpaPtpAffx.220488.1.S1_atpmrna36881--4e+0At3g51590LTP12 (LIPID TRANSFER PROTEIN 12)C.G.S.X.
0.063e+032Triticum aestivumTa.9742.2.A1_atCD453928--5e+0At3g51590LTP12 (LIPID TRANSFER PROTEIN 12)C.G.S.X.
0.045e-236Vitis vinifera1618030_atCA809596--5e-6At5g0296040S ribosomal protein S23 (RPS23B)C.G.S.X.
0.042e+128Zea maysZmAffx.71.1.A1_atAI665169hypothetical protein LOC100274794-3e+0At1g50640ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)C.G.S.X.
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Biological processes



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ECCGO IDProcess Name
CGO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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