Gene omics information

Query gene ID At3g51430
Gene name YLS2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At3g51430824306YLS2strictosidine synthase-like proteinS.X.H.G.
0.5773.8At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.4152.4At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.S.X.H.G.
0.4050.8At2g29990817549NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAMS.X.H.G.
0.4050.8At5g04930830375ALA1 (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.S.X.H.G.
0.2930.3At3g45620823704transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.2420.7At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.2319.3At4g26070828713MEK1 (MAP KINASE/ ERK KINASE 1)Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.S.X.H.G.
0.2319.3At5g12890831129UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFS.X.H.G.
0.157.8At5g02290831880NAKEncodes a candidate protein kinase NAK that is similar to the oncogenes met and abl.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.299.7GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
22.299.6GSM131537ATGE_25_AGSE5630AtGenExpress: Developmental series (leaves)
21.099.6GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
20.899.6GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
19.799.6GSM131538ATGE_25_BGSE5630AtGenExpress: Developmental series (leaves)
19.299.6GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
18.699.5GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
18.099.5GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
17.999.5GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
17.499.5GSM131539ATGE_25_CGSE5630AtGenExpress: Developmental series (leaves)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.830950At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFC.G.S.X.
0.830860At3g51440824307strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFAC.G.S.X.
0.810791At3g51420824305SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFAC.G.S.X.
0.031e-138At5g26790832737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e-138At1g80530844392nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMAC.G.S.X.
0.011e-138At1g52160841647TRZ3 (TRNASE Z 3)Encodes a tRNase Z.C.G.S.X.
0.031e-138At1g24735839082O-methyltransferaseF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAC.G.S.X.
0.026e-136At5g14480831299glycosyl transferase family 17 proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFVC.G.S.X.
0.016e-136At5g43360834354PHT3 (PHOSPHATE TRANSPORTER 3)phosphate transporterC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.24580.1.A1_atCA785339--9e-1At4g15790unknown proteinC.G.S.X.
0.021e+034Hordeum vulgareHVSMEn0012H13r2_atHVSMEn0012H13r2--5e-2At5g63280zinc finger (C2H2 type) family proteinC.G.S.X.
0.024e+034Oryza sativaOsAffx.24301.1.S1_at---0C.G.S.X.
0.033e+034Populus trichocarpaPtpAffx.221510.1.S1_atpmrna38429hypothetical protein-7e-23At3g13690protein kinase family proteinC.G.S.X.
0.036e-136Triticum aestivumTa.19659.1.S1_atCA699620--3e-1At4g17670senescence-associated protein-relatedC.G.S.X.
0.023e+032Vitis vinifera1609181_atCF606070hypothetical protein LOC100246904-3e-1At3g51420SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)C.G.S.X.
0.032e-136Zea maysZmAffx.483.1.A1_atAI691297hypothetical protein LOC100279915-1e+1At5g59870HTA6C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009821The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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