Gene omics information

Query gene ID At3g51420
Gene name SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g51420824305SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFAS.X.H.G.
0.7284.8At3g19800821517unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6277.3At4g28030828918GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOAS.X.H.G.
0.6176.7At2g45740819182PEX11Dmember of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.S.X.H.G.
0.6075.7At5g03880831679electron carrierF:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFMS.X.H.G.
0.5974.7At1g18170838396immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPFS.X.H.G.
0.5773.8At3g27925822416DEGP1 (DegP protease 1)Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.S.X.H.G.
0.5673.0At4g23890828489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMFS.X.H.G.
0.5673.0At5g38660833856APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)mutant has Altered acclimation responses;S.X.H.G.
0.5673.0At1g64680842776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
27.399.7E-ATMX-35-raw-cel-1574334896
20.099.6E-ATMX-35-raw-cel-1574334912
8.699.0GSM128653Underwood_1-6_Cor-hrpS-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.198.9GSM260879A2-Greco-WTGSE10322Higher order transcriptional regulation conferred by the bountiful gain of function mutant
8.198.9E-ATMX-32-raw-cel-1562974681
8.198.9GSM133737Buchanan-Wollaston_A-9-bwoll-Co1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
8.098.9E-MEXP-1304-raw-cel-1530619219
7.798.9GSM1330412525GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
7.698.9GSM1330422527GSE5685AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
7.698.9GSM128659Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.770791At3g51430824306YLS2strictosidine synthase-like proteinC.G.S.X.
0.750718At3g51440824307strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFAC.G.S.X.
0.611e-128460At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFC.G.S.X.
0.016e-136At5g06310830519AtPOT1b (protection of telomeres 1b)Encodes AtPOT1b. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.C.G.S.X.
0.016e-136At3g07040819889RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1)Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.C.G.S.X.
0.032e+034At5g26790832737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.022e+034At5g27910832857NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOC.G.S.X.
0.022e+034At5g614508362662-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMAPFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxGmaAffx.50410.1.A1_atBI317530--3e+0At1g62420unknown proteinC.G.S.X.
0.024e+032Hordeum vulgareS0001000007H12F1_atS0001000007H12F1--2e+0At5g11130exostosin family proteinC.G.S.X.
0.021e+036Oryza sativaOs01g0324800NM_183801.1--4e-1At2g15580zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e+132Populus trichocarpaPtpAffx.7918.3.A1_a_atCV255027--3e+0At3g114704'-phosphopantetheinyl transferase family proteinC.G.S.X.
0.029e+032Triticum aestivumTaAffx.9597.1.S1_atCA594102--4e+0At5g51860MADS-box protein (AGL72)C.G.S.X.
0.042e-136Vitis vinifera1609181_atCF606070hypothetical protein LOC100246904-3e-1At3g51420SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)C.G.S.X.
0.021e+130Zea maysZm.3712.1.S1_atAW506785Hypothetical protein LOC100216583-6e-2At1g69430unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009821The chemical reactions and pathways resulting in the formation of alkaloids, nitrogen-containing natural products which are not otherwise classified as nonprotein amino acids, amines, peptides, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones, or primary metabolite (such as purine or pyrimidine bases).
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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