CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51350

Gene name aspartyl protease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV S.X. H.G.
1.00 100.0 At2g42060 818806 CHP-rich zinc finger protein, putative F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM S.X. H.G.
0.67 81.6 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.67 81.6 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.57 73.8 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
0.50 65.3 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.44 57.2 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
225.3 100.0 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
221.1 100.0 E-MEXP-828-raw-cel-1156922509
176.1 100.0 E-MEXP-828-raw-cel-1156922342
154.2 99.9 E-MEXP-828-raw-cel-1156922416
136.6 99.9 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
130.3 99.9 E-MEXP-828-raw-cel-1156922455
113.9 99.9 E-MEXP-828-raw-cel-1156922485
104.6 99.9 GSM157307 Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
69.2 99.9 E-MEXP-828-raw-cel-1156922386
68.1 99.9 GSM184561 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 898 At3g51340 824297 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMO C.G. S.X.
0.75 1e-144 513 At3g51330 824296 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV C.G. S.X.
0.03 6e-11 69 At3g51360 824299 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO C.G. S.X.
0.07 2e-1 38 At2g17760 816285 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PFMO C.G. S.X.
0.01 8e-1 36 At5g17170 831581 ENH1 (enhancer of sos3-1) F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO C.G. S.X.
0.01 8e-1 36 At4g31970 829327 CYP82C2 member of CYP82C C.G. S.X.
0.01 8e-1 36 At4g11420 826746 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. C.G. S.X.
0.01 8e-1 36 At4g31940 829324 CYP82C4 member of CYP82C C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max PsAffx.CL1382Contig1_at PsAffx.CL1382Contig1 - - 1e+0 At1g75860 unknown protein C.G. S.X.
0.01 6e+0 32 Hordeum vulgare Contig16201_at Contig16201 - - 1e+0 At4g19360 unknown protein C.G. S.X.
0.02 6e+0 34 Oryza sativa Os10g0401000 AK120891.1 - Conserved hypothetical protein 4e+0 At5g65207 unknown protein C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.207249.1.S1_at pmrna14365 hypothetical protein - 4e-42 At4g35880 aspartyl protease family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.18930.1.A1_at CD870991 - - 2e-1 At5g01570 unknown protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1616354_at CB913437 hypothetical protein LOC100251981 - 6e-6 At2g24590 splicing factor, putative C.G. S.X.
0.02 1e+0 34 Zea mays Zm.166.2.S1_at AI664966 Pyruvate decarboxylase1 - 3e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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