CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g51140

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At3g51140 824278 - F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPO S.X. H.G.
0.71 84.2 At1g11870 837734 SRS (SERYL-TRNA SYNTHETASE) Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. S.X. H.G.
0.54 69.5 At4g36390 829791 radical SAM domain-containing protein / TRAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAP S.X. H.G.
0.50 65.3 At2g19940 816513 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP S.X. H.G.
0.46 59.8 At5g52520 835328 OVA6 (OVULE ABORTION 6) F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFP S.X. H.G.
0.43 55.3 At5g13120 831151 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;OBMFPAV S.X. H.G.
0.42 53.9 At3g58140 824983 phenylalanyl-tRNA synthetase class IIc family protein F:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAP S.X. H.G.
0.40 50.8 At5g53860 835467 emb2737 (embryo defective 2737) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;P S.X. H.G.
0.39 48.4 At3g10670 820236 ATNAP7 Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe�S clusters. Expressed in embryos and meristems. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 98.9 GSM133278 RIKEN-GODA1B-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
7.4 98.8 GSM157393 Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
7.1 98.8 E-MEXP-711-raw-cel-1563002537
6.7 98.7 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.6 98.7 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.6 98.7 GSM157392 Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
6.3 98.6 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.0 98.5 GSM157389 Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
6.0 98.5 GSM157388 Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
5.9 98.5 E-MEXP-432-raw-cel-590864409
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At4g00690 828036 ULP1B (UB-LIKE PROTEASE 1B) F:cysteine-type peptidase activity;P:proteolysis;C:chloroplast;MPFOV C.G. S.X.
0.02 4e-1 36 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. C.G. S.X.
0.01 4e-1 36 At1g27680 839660 APL2 (ADPGLC-PPASE LARGE SUBUNIT) ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions. C.G. S.X.
0.02 4e-1 36 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV C.G. S.X.
0.01 4e-1 36 At1g59870 842281 PEN3 (PENETRATION 3) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid�dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance. C.G. S.X.
0.02 4e-1 36 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.01 2e+0 34 At5g39410 833937 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope;OBMFPA C.G. S.X.
0.00 2e+0 34 At4g17140 827424 - F:molecular_function unknown;P:biological_process unknown;C:vacuole;MOFPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max GmaAffx.84241.1.S1_at AI437803 - - 6e-2 At3g51140 - C.G. S.X.
0.08 3e-6 52 Hordeum vulgare Contig9136_at Contig9136 - - 1e-5 At3g51140 - C.G. S.X.
0.04 1e-2 42 Oryza sativa Os03g0255200 AK071625.1 - - 1e-2 At3g51140 - C.G. S.X.
0.14 2e-16 87 Populus trichocarpa PtpAffx.207400.1.S1_at pmrna14687 hypothetical protein - 9e-17 At3g51140 - C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.43326.1.S1_at BQ801486 - - 3e+0 At4g25400 basix helix-loop-helix (bHLH) family protein C.G. S.X.
0.27 6e-13 73 Vitis vinifera 1617601_at CF208695 similar to heat shock protein binding - 1e-12 At3g51140 - C.G. S.X.
0.02 3e+0 32 Zea mays Zm.2668.1.A1_at CB334210 hypothetical protein LOC100193351 - 4e+0 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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