Gene omics information

Query gene ID At3g51140
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
0.7184.2At1g11870837734SRS (SERYL-TRNA SYNTHETASE)Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.S.X.H.G.
0.5469.5At4g36390829791radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:biological_process unknown;C:chloroplast;OBMAPS.X.H.G.
0.5065.3At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.4659.8At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPS.X.H.G.
0.4355.3At5g13120831151peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;OBMFPAVS.X.H.G.
0.4253.9At3g58140824983phenylalanyl-tRNA synthetase class IIc family proteinF:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAPS.X.H.G.
0.4050.8At5g53860835467emb2737 (embryo defective 2737)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PS.X.H.G.
0.3948.4At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe–S clusters. Expressed in embryos and meristems.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.898.9GSM133278RIKEN-GODA1B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
7.498.8GSM157393Sakakibara_1-12_DMSO-treatment-mutant_Rep3_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
6.798.7GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
6.698.7GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
6.698.7GSM157392Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
6.398.6GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.098.5GSM157389Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
6.098.5GSM157388Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-136At4g00690828036ULP1B (UB-LIKE PROTEASE 1B)F:cysteine-type peptidase activity;P:proteolysis;C:chloroplast;MPFOVC.G.S.X.
0.024e-136At4g05390825887ATRFNR1 (ROOT FNR 1)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.C.G.S.X.
0.014e-136At1g27680839660APL2 (ADPGLC-PPASE LARGE SUBUNIT)ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.C.G.S.X.
0.024e-136At1g07010837211calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAVC.G.S.X.
0.014e-136At1g59870842281PEN3 (PENETRATION 3)ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid–dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.C.G.S.X.
0.024e-136At1g14550838017anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMC.G.S.X.
0.012e+034At5g39410833937binding / catalyticF:binding, catalytic activity;P:metabolic process;C:mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope;OBMFPAC.G.S.X.
0.002e+034At4g17140827424-F:molecular_function unknown;P:biological_process unknown;C:vacuole;MOFPBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-138Glycine maxGmaAffx.84241.1.S1_atAI437803--6e-2At3g51140-C.G.S.X.
0.083e-652Hordeum vulgareContig9136_atContig9136--1e-5At3g51140-C.G.S.X.
0.041e-242Oryza sativaOs03g0255200AK071625.1--1e-2At3g51140-C.G.S.X.
0.142e-1687Populus trichocarpaPtpAffx.207400.1.S1_atpmrna14687hypothetical protein-9e-17At3g51140-C.G.S.X.
0.037e+032Triticum aestivumTaAffx.43326.1.S1_atBQ801486--3e+0At4g25400basix helix-loop-helix (bHLH) family proteinC.G.S.X.
0.276e-1373Vitis vinifera1617601_atCF208695similar to heat shock protein binding-1e-12At3g51140-C.G.S.X.
0.023e+032Zea maysZm.2668.1.A1_atCB334210hypothetical protein LOC100193351-4e+0At1g01050AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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