Gene omics information

Query gene ID At3g51120
Gene name DNA binding / nucleic acid binding / protein binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g51120824276DNA binding / nucleic acid binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding, nucleic acid binding;P:histone modification, transcription initiation;C:nucleus;MOPBFVS.X.H.G.
0.6982.9At3g11960820369cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFPOS.X.H.G.
0.6478.9At4g00450827954CRP (CRYPTIC PRECOCIOUS)A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.S.X.H.G.
0.6176.7At5g47480834798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAVS.X.H.G.
0.5673.0At1g07990837314SIT4 phosphatase-associated family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPBVS.X.H.G.
0.5673.0At3g12980820484HAC5Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.S.X.H.G.
0.5368.6At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.5368.6At1g22860838891unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.5368.6At3g59770825146SAC9Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.S.X.H.G.
0.5368.6At5g66810836814-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
41.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.799.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.999.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.999.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.499.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.199.7GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
29.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
28.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.061e-450At2g18090816321PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPBOFC.G.S.X.
0.013e-242At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.C.G.S.X.
0.011e-140At5g59560836075SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.C.G.S.X.
0.011e-140At3g19220821456SCO2 (SNOWY COTYLEDON 2)Encodes a zinc finger protein that is similar to DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.C.G.S.X.
0.011e-140At1g47655841175Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POC.G.S.X.
0.011e-140At1g05300837029ZIP5member of Fe(II) transporter isolog familyC.G.S.X.
0.015e-138At5g15580831411LNG1 (LONGIFOLIA1)Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-1377Glycine maxGmaAffx.64127.1.S1_atBI786462--8e-1At4g24700unknown proteinC.G.S.X.
0.016e-240Hordeum vulgareContig7939_atContig7939--2e-34At4g25550protein bindingC.G.S.X.
0.016e-242Oryza sativaOsAffx.21428.1.S1_at---0C.G.S.X.
0.092e-1999Populus trichocarpaPtpAffx.221978.1.S1_atpmrna39133hypothetical protein-1e-19At3g51120DNA binding / nucleic acid binding / protein binding / zinc ion bindingC.G.S.X.
0.011e-140Triticum aestivumTaAffx.693.1.S1_atCD492128--2e-3At3g12650unknown proteinC.G.S.X.
0.012e+034Vitis vinifera1620661_atCB970699hypothetical protein LOC100251688-1e-1At5g39760AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)C.G.S.X.
0.015e-240Zea maysZm.9841.1.A1_atBM340753--6e-3At2g01340unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
LGO:0016570The covalent alteration of one or more amino acid residues within a histone protein.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage