CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50990

Gene name electron carrier/ heme binding / peroxidase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.56 73.0 At3g50990 824263 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
0.77 88.0 At1g20500 838638 4-coumarate-CoA ligase F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.77 88.0 At2g23580 816890 MES4 (METHYL ESTERASE 4) Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro. S.X. H.G.
0.77 88.0 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.71 84.2 At5g52500 835326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g02590 839372 aldehyde oxidase, putative F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF S.X. H.G.
0.63 78.1 At2g23550 816887 MES6 (METHYL ESTERASE 6) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2371.8 100.0 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
334.6 100.0 GSM133816 Yang_1-1_young-pod_Rep1_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
208.8 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
155.9 99.9 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
146.4 99.9 E-MEXP-1451-raw-cel-1585200330
111.0 99.9 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
105.1 99.9 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
99.1 99.9 E-MEXP-1451-raw-cel-1585200298
95.8 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.0 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 2e-59 230 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.05 1e-10 67 At4g16270 827322 peroxidase 40 (PER40) (P40) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.03 1e-7 57 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.03 6e-7 56 At3g32980 823067 peroxidase 32 (PER32) (P32) (PRXR3) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane;PFO C.G. S.X.
0.03 9e-6 52 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM C.G. S.X.
0.03 9e-6 52 At4g37530 829908 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:endomembrane system;PFO C.G. S.X.
0.03 9e-6 52 At2g22420 816773 peroxidase 17 (PER17) (P17) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB C.G. S.X.
0.04 9e-6 52 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Glycine max GmaAffx.90443.1.S1_s_at CF806168 - - 2e-7 At1g49570 peroxidase, putative C.G. S.X.
0.06 2e-1 36 Hordeum vulgare Contig24612_at Contig24612 - - 3e-1 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.08 3e-4 48 Oryza sativa Os06g0521200 9634.m03088 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-4 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.09 2e-7 57 Populus trichocarpa PtpAffx.18226.1.A1_a_at CV263828 hypothetical protein - 5e-17 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.04 6e-4 46 Triticum aestivum TaAffx.119320.1.S1_at CA637214 - - 3e-4 At4g33870 peroxidase, putative C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1616833_at CF203408.1 - - 2e-1 At3g50990 electron carrier/ heme binding / peroxidase C.G. S.X.
0.04 6e-5 48 Zea mays Zm.404.1.S1_at AF037033.1 anionic peroxidase H - 8e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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