Gene omics information

Query gene ID At3g50980
Gene name XERO1 (DEHYDRIN XERO 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
0.9396.4At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9195.6At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.9095.1At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.8994.6At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
0.8894.0At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.S.X.H.G.
0.8693.1At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8391.4At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMS.X.H.G.
0.8190.4At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
403.1100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
334.5100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
308.5100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
302.4100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
300.8100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
299.4100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
293.2100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
276.1100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
275.5100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
272.7100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.271e-859At5g66400836772RAB18 (RESPONSIVE TO ABA 18)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.C.G.S.X.
0.245e-857At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVC.G.S.X.
0.218e-754At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.C.G.S.X.
0.098e-444At4g38410829998dehydrin, putativeF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBAC.G.S.X.
0.138e-444At1g20450838633ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.C.G.S.X.
0.043e-342At1g20440838632COR47 (COLD-REGULATED 47)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.C.G.S.X.
0.083e-342At1g76180843950ERD14 (EARLY RESPONSE TO DEHYDRATION 14)Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-240Glycine maxGma.36.1.S1_atM93568.1maturation-associated protein-2e+0At3g50970LTI30 (LOW TEMPERATURE-INDUCED 30)C.G.S.X.
0.132e-548Hordeum vulgareContig1718_s_atContig1718--1e-4At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
0.126e-961Oryza sativaOs11g04517009639.m02369-Dehydrin 99e-9At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
0.042e-240Populus trichocarpaPtpAffx.212575.1.S1_atpmrna24635hypothetical protein-2e-6At5g53040RWP-RK domain-containing proteinC.G.S.X.
0.128e-754Triticum aestivumTa.20643.1.S1_atCA484854--2e-6At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
0.099e-442Vitis vinifera1613144_atBM436721--2e-6At2g21490LEA (DEHYDRIN LEA)C.G.S.X.
0.109e-856Zea maysZm.14392.1.S1_atAY104757.1dehydrin1-6e-7At3g50980XERO1 (DEHYDRIN XERO 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
CGO:0009415A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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