Gene omics information

Query gene ID At3g50860
Gene name clathrin adaptor complex small chain family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g50860824250clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOPS.X.H.G.
0.4050.8At1g69980843335unknown proteinF:unknown;P:unknown;C:endomembrane system;PS.X.H.G.
0.2115.8At1g29990839878PDF6 (PREFOLDIN 6)Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.S.X.H.G.
0.1811.4At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.S.X.H.G.
0.030.6At1g22300838837GRF10 (GENERAL REGULATORY FACTOR 10)Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.999.5E-MEXP-1443-raw-cel-1581869573
15.299.4E-MEXP-1443-raw-cel-1581869515
13.799.4GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
12.799.3GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
12.399.3GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.499.2GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.199.2GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
9.199.1GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
8.699.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
7.998.9GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-240At3g46820823835TOPP5Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.C.G.S.X.
0.012e-136At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.C.G.S.X.
0.041e+034At5g11070830974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e+034At5g38040833784UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOFC.G.S.X.
0.031e+034At3g18773821409zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.021e+034At3g60790825250F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMC.G.S.X.
0.021e+034At2g29400817489TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)Type 1 protein phosphatase, expressed in roots, rosettes and flowersC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.056e-342Glycine maxGmaAffx.41365.1.S1_atBI426869--3e-3At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
0.042e+032Hordeum vulgareHY10E08u_atHY10E08u--2e+0At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
0.092e-963Oryza sativaOs03g0228400AK103703.1-Adapter-related protein complex 3 sigma 2 subunit(Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit)(Sigma-3B-adaptin)3e-9At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
0.581e-34147Populus trichocarpaPtpAffx.225686.1.S1_atpmrna45219hypothetical protein-1e-34At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
0.244e-961Triticum aestivumTaAffx.58643.1.S1_atCA617666--5e-9At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
0.041e+032Vitis vinifera1612297_atCA812105hypothetical protein LOC100244787-2e-2At5g12410THUMP domain-containing proteinC.G.S.X.
0.162e-961Zea maysZm.3194.1.A1_atAY109149.1hypothetical protein LOC100191763-9e-9At3g50860clathrin adaptor complex small chain family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
LGO:0015031The directed movement of proteins into, out of, within or between cells.
LGO:0016192The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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