Gene omics information

Query gene ID At3g50770
Gene name calmodulin-related protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3032.1At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBS.X.H.G.
0.6176.7At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseS.X.H.G.
0.4862.5At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVS.X.H.G.
0.4761.2At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.S.X.H.G.
0.4050.8At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseS.X.H.G.
0.3643.6At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PS.X.H.G.
0.2217.5At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBS.X.H.G.
0.2014.4At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMS.X.H.G.
0.168.8At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
151.499.9GSM205160protoplast_controlDNA_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
124.499.9GSM268247WT-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
105.499.9GSM204026protoplast_control_rep1GSE8248Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
102.699.9GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
98.599.9GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
95.899.9GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
92.899.9GSM157318Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
88.099.9GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
78.799.9GSM157312Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
77.499.9GSM133029BC482-1GSE5684AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e+034At5g39430833939unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;POMC.G.S.X.
0.011e+034At4g00700828031C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.011e+034At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.C.G.S.X.
0.011e+034At3g60380825209-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.021e+034At3g52930824459fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPFC.G.S.X.
0.011e+034At3g28040822428leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.041e+034At2g015546240605unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.035e+032At5g05830830468zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOC.G.S.X.
0.015e+032At5g60170836139RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion bindingF:protein binding, RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-240Glycine maxGmaAffx.66424.1.S1_atAW306696--3e-2At3g50770calmodulin-related protein, putativeC.G.S.X.
0.042e+032Hordeum vulgareContig1323_s_atContig1323--1e-72At3g56800CAM3 (CALMODULIN 3)C.G.S.X.
0.042e+034Oryza sativaOsAffx.9912.1.S1_at---0C.G.S.X.
0.152e-963Populus trichocarpaPtpAffx.85113.1.A1_atCX182523--2e-9At3g50770calmodulin-related protein, putativeC.G.S.X.
0.055e+032Triticum aestivumTaAffx.51298.1.S1_atCA727855--4e+0At3g50770calmodulin-related protein, putativeC.G.S.X.
0.046e+030Vitis vinifera1621429_atCB971575--1e+0At5g60560F-box family proteinC.G.S.X.
0.035e-134Zea maysZm.14591.3.S1_a_atCK370424triosephosphate isomerase, cytosolic-3e-7At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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