CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50770

Gene name calmodulin-related protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB S.X. H.G.
0.61 76.7 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase S.X. H.G.
0.48 62.5 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV S.X. H.G.
0.47 61.2 At2g18660 816381 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. S.X. H.G.
0.40 50.8 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase S.X. H.G.
0.36 43.6 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.22 17.5 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.20 14.4 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM S.X. H.G.
0.16 8.8 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
151.4 99.9 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
124.4 99.9 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
105.4 99.9 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
102.6 99.9 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
98.5 99.9 GSM131605 ATGE_41_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
95.8 99.9 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
92.8 99.9 GSM157318 Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
88.0 99.9 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
78.7 99.9 GSM157312 Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
77.4 99.9 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e+0 34 At5g39430 833939 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;POM C.G. S.X.
0.01 1e+0 34 At4g00700 828031 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 1e+0 34 At3g03450 821251 RGL2 (RGA-LIKE 2) Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. C.G. S.X.
0.01 1e+0 34 At3g60380 825209 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 1e+0 34 At3g52930 824459 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPF C.G. S.X.
0.01 1e+0 34 At3g28040 822428 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 1e+0 34 At2g01554 6240605 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 5e+0 32 At5g05830 830468 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.01 5e+0 32 At5g60170 836139 RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding F:protein binding, RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-2 40 Glycine max GmaAffx.66424.1.S1_at AW306696 - - 3e-2 At3g50770 calmodulin-related protein, putative C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig1323_s_at Contig1323 - - 1e-72 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.9912.1.S1_at - - - 0 C.G. S.X.
0.15 2e-9 63 Populus trichocarpa PtpAffx.85113.1.A1_at CX182523 - - 2e-9 At3g50770 calmodulin-related protein, putative C.G. S.X.
0.05 5e+0 32 Triticum aestivum TaAffx.51298.1.S1_at CA727855 - - 4e+0 At3g50770 calmodulin-related protein, putative C.G. S.X.
0.04 6e+0 30 Vitis vinifera 1621429_at CB971575 - - 1e+0 At5g60560 F-box family protein C.G. S.X.
0.03 5e-1 34 Zea mays Zm.14591.3.S1_a_at CK370424 triosephosphate isomerase, cytosolic - 3e-7 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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