Gene omics information

Query gene ID At3g50700
Gene name AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g50700824234AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)zinc finger protein, similar to maize Indeterminate1 (ID1)S.X.H.G.
0.4457.2At1g05805837090basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cytosol;PMOFBAS.X.H.G.
0.4050.8At1g17970838377zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.2522.6At3g19553821492amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:amino acid transport, transport;C:membrane;BMOFPAS.X.H.G.
0.2522.6At5g08520830751myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFBS.X.H.G.
0.2319.3At3g47620823916AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.S.X.H.G.
0.1811.4At1g62430842541ATCDS1Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.S.X.H.G.
0.124.9At4g26130828719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.899.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
18.299.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
15.799.5E-MEXP-265-raw-cel-414617783
14.399.4GSM134360St.Clair_1-21_429_Cvi-1_0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
13.499.4E-MEXP-265-raw-cel-414617890
13.299.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
12.999.3GSM94006Wild type first repeatGSE4113Arabidopsis plants with altered levels of alternative oxidase
11.599.3GSM142887MW001_ATH1_A1-Wheel-a14GSE6179An investigation into transcriptional changes in developing Arabidopsis leaf caused by novel signalling protein, SPH1.
10.999.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.599.1Millenaar_A3_LL_Rep1_ATH1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.462e-130466At5g66730836806zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
0.211e-51204At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
0.183e-46186At2g02080814739AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4)F:transcription factor activity;P:unknown;C:intracellular, chloroplast;MOPFBVAC.G.S.X.
0.212e-38161At4g02670828206AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPFC.G.S.X.
0.221e-36155At2g02070814738AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOFPBAVC.G.S.X.
0.193e-34147At1g55110841954AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFC.G.S.X.
0.184e-33143At3g45260823664zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBC.G.S.X.
0.134e-30133At5g44160834439NUC (nutcracker)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.182e-35151Glycine maxGmaAffx.49918.1.S1_atBG362868--3e-22At4g02670AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)C.G.S.X.
0.021e+034Hordeum vulgareHS08B12u_x_atHS08B12u--2e-10At1g09200histone H3C.G.S.X.
0.081e-656Oryza sativaOsAffx.24525.1.S1_at---0C.G.S.X.
0.298e-57222Populus trichocarpaPtpAffx.139060.1.S1_atCN522335hypothetical protein-3e-45At1g55110AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.81600.1.S1_atCA684146--1e+0At2g3448060S ribosomal protein L18A (RPL18aB)C.G.S.X.
0.022e-136Vitis vinifera1616881_atCF373182hypothetical protein LOC100249301-3e-7At2g17270mitochondrial substrate carrier family proteinC.G.S.X.
0.025e+032Zea maysZmAffx.1053.1.A1_atAI881846--3e+0At1g16240SYP51 (SYNTAXIN OF PLANTS 51)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage