CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50590

Gene name nucleotide binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.34 39.8 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV S.X. H.G.
0.89 94.6 At1g21630 838765 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVA S.X. H.G.
0.73 85.5 At3g08850 820032 RAPTOR1 Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. S.X. H.G.
0.67 81.6 At2g05170 815065 ATVPS11 Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. S.X. H.G.
0.67 81.6 At5g39500 833946 pattern formation protein, putative F:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB S.X. H.G.
0.63 78.1 At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.9 99.5 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.3 99.5 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4 99.4 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.7 99.3 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.5 99.3 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.1 99.2 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
11.1 99.2 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.9 99.2 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
10.4 99.2 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.5 99.1 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 42 At5g38386 833823 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-2 42 At4g13960 827030 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 40 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 2e-1 40 At3g59000 825069 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 38 Atcg00190 - - Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. C.G. S.X.
0.01 6e-1 38 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.01 6e-1 38 At5g38396 833826 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 38 At5g38390 833824 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 9e-44 180 Glycine max GmaAffx.92345.1.S1_s_at CF808070 - - 9e-45 At3g50590 nucleotide binding C.G. S.X.
0.05 1e-3 46 Hordeum vulgare Contig5985_at Contig5985 - - 1e-3 At3g50590 nucleotide binding C.G. S.X.
0.22 1e-19 101 Oryza sativa Os09g0408000 AK059658.1 - Conserved hypothetical protein 2e-11 At3g50590 nucleotide binding C.G. S.X.
0.15 7e-57 224 Populus trichocarpa PtpAffx.40088.1.A1_at CA927295 - - 6e-58 At3g50590 nucleotide binding C.G. S.X.
0.10 3e-9 65 Triticum aestivum Ta.6698.1.S1_at CK200349 - - 2e-9 At3g50590 nucleotide binding C.G. S.X.
0.01 1e-2 42 Vitis vinifera 1608593_at CB981729 hypothetical protein LOC100254837 - 1e+0 At2g27340 - C.G. S.X.
0.12 2e-14 81 Zea mays Zm.5951.1.A1_at AI665912 - - 3e-14 At3g50590 nucleotide binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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