CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50530

Gene name CRK (CDPK-related kinase)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g50530 824217 CRK (CDPK-related kinase) CDPK-related kinase S.X. H.G.
0.49 63.5 At1g63690 842673 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF S.X. H.G.
0.48 62.5 At1g22060 838811 - F:unknown;P:unknown;C:vacuole;MOBFPAV S.X. H.G.
0.43 55.3 At5g47820 834833 FRA1 (FRAGILE FIBER 1) encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers. S.X. H.G.
0.42 53.9 At1g28440 839742 HSL1 (HAESA-Like 1) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.41 52.4 At5g08390 830737 - F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV S.X. H.G.
0.38 46.7 At2g38440 818425 SCAR2 (SCAR HOMOLOG 2) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. S.X. H.G.
0.38 46.7 At1g10870 837629 AGD4 (ARF-GAP domain 4) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3. S.X. H.G.
0.35 41.6 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.34 39.8 At2g32950 817857 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.3 99.8 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
39.3 99.8 E-MEXP-1474-raw-cel-1593932833
36.8 99.7 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
33.4 99.7 E-MEXP-1474-raw-cel-1593932897
28.8 99.7 E-MEXP-1474-raw-cel-1593932513
28.6 99.7 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
27.5 99.7 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
26.8 99.7 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
24.1 99.6 E-MEXP-1474-raw-cel-1593932609
22.1 99.6 E-MEXP-1474-raw-cel-1593932929
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 8e-26 119 At3g19100 821445 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.32 1e-21 105 At1g49580 841382 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.13 2e-17 91 At3g56760 824843 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane, membrane;MOPFBVA C.G. S.X.
0.18 7e-17 89 At2g41140 818713 CRK1 (CDPK-RELATED KINASE 1) Encodes CDPK-related kinase 1 (CRK1). C.G. S.X.
0.09 4e-12 73 At2g46700 819282 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MOPFBVA C.G. S.X.
0.08 6e-11 69 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.03 4e-9 63 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase C.G. S.X.
0.11 2e-5 52 At3g49370 824099 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.02 6e-5 50 At3g51850 824348 CPK13 member of Calcium Dependent Protein Kinase C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 3e-29 131 Glycine max Gma.17975.2.S1_at BQ628976 - - 2e-29 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.10 3e-2 40 Hordeum vulgare rbags12c10_at rbags12c10 - - 2e-2 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.23 3e-48 194 Oryza sativa Os07g0619800 AK121343.1 - CDPK-related protein kinase (EC 2.7.1.-) (PK421) 8e-48 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.26 3e-41 171 Populus trichocarpa PtpAffx.92888.1.S1_s_at AI166960 hypothetical protein - 7e-42 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.14 4e-3 44 Triticum aestivum Ta.21200.1.S1_at BT009309.1 - - 2e-4 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.09 8e-17 87 Vitis vinifera 1610570_at CA807939 hypothetical protein LOC100246879 - 2e-24 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.22 6e-31 135 Zea mays Zm.19037.1.S1_at CA404446 - - 1e-30 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage