Gene omics information

Query gene ID At3g50530
Gene name CRK (CDPK-related kinase)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g50530824217CRK (CDPK-related kinase)CDPK-related kinaseS.X.H.G.
0.4963.5At1g63690842673protease-associated (PA) domain-containing proteinF:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBFS.X.H.G.
0.4862.5At1g22060838811-F:unknown;P:unknown;C:vacuole;MOBFPAVS.X.H.G.
0.4355.3At5g47820834833FRA1 (FRAGILE FIBER 1)encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.S.X.H.G.
0.4253.9At1g28440839742HSL1 (HAESA-Like 1)F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.4152.4At5g08390830737-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAVS.X.H.G.
0.3846.7At2g38440818425SCAR2 (SCAR HOMOLOG 2)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.S.X.H.G.
0.3846.7At1g10870837629AGD4 (ARF-GAP domain 4)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.S.X.H.G.
0.3541.6At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.3439.8At2g32950817857COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.399.8GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
39.399.8E-MEXP-1474-raw-cel-1593932833
36.899.7GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
33.499.7E-MEXP-1474-raw-cel-1593932897
28.899.7E-MEXP-1474-raw-cel-1593932513
28.699.7GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
27.599.7GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
26.899.7GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
24.199.6E-MEXP-1474-raw-cel-1593932609
22.199.6E-MEXP-1474-raw-cel-1593932929
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.188e-26119At3g19100821445calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.321e-21105At1g49580841382calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.132e-1791At3g56760824843calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane, membrane;MOPFBVAC.G.S.X.
0.187e-1789At2g41140818713CRK1 (CDPK-RELATED KINASE 1)Encodes CDPK-related kinase 1 (CRK1).C.G.S.X.
0.094e-1273At2g46700819282calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MOPFBVAC.G.S.X.
0.086e-1169At5g24430832514calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.034e-963At2g17890816299CPK16member of Calcium Dependent Protein KinaseC.G.S.X.
0.112e-552At3g49370824099calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.026e-550At3g51850824348CPK13member of Calcium Dependent Protein KinaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.333e-29131Glycine maxGma.17975.2.S1_atBQ628976--2e-29At3g50530CRK (CDPK-related kinase)C.G.S.X.
0.103e-240Hordeum vulgarerbags12c10_atrbags12c10--2e-2At3g50530CRK (CDPK-related kinase)C.G.S.X.
0.233e-48194Oryza sativaOs07g0619800AK121343.1-CDPK-related protein kinase (EC 2.7.1.-) (PK421)8e-48At3g50530CRK (CDPK-related kinase)C.G.S.X.
0.263e-41171Populus trichocarpaPtpAffx.92888.1.S1_s_atAI166960hypothetical protein-7e-42At3g50530CRK (CDPK-related kinase)C.G.S.X.
0.144e-344Triticum aestivumTa.21200.1.S1_atBT009309.1--2e-4At3g19100calcium-dependent protein kinase, putative / CDPK, putativeC.G.S.X.
0.098e-1787Vitis vinifera1610570_atCA807939hypothetical protein LOC100246879-2e-24At5g24430calcium-dependent protein kinase, putative / CDPK, putativeC.G.S.X.
0.226e-31135Zea maysZm.19037.1.S1_atCA404446--1e-30At3g50530CRK (CDPK-related kinase)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006468The process of introducing a phosphate group on to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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