CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50480

Gene name HR4 (HOMOLOG OF RPW8 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g50480 824212 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 S.X. H.G.
0.36 43.6 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.33 38.1 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.14 6.8 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.06 1.4 At4g23220 828421 kinase F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.9 99.8 E-MEXP-807-raw-cel-1173273032
51.4 99.8 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
50.8 99.8 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
49.3 99.8 E-MEXP-1094-raw-cel-1379507273
48.8 99.8 E-MEXP-1094-raw-cel-1379507313
44.0 99.8 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
42.3 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
42.1 99.8 GSM322555 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
41.3 99.8 E-MEXP-807-raw-cel-1173272921
40.7 99.8 GSM142847 MG001_ATH1_A28-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e+0 34 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. C.G. S.X.
0.01 1e+0 34 At1g45160 841084 kinase F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.02 1e+0 34 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. C.G. S.X.
0.01 5e+0 32 At5g26910 832749 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBMPFA C.G. S.X.
0.01 5e+0 32 At5g40400 834038 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 5e+0 32 At3g10140 820177 RECA3 (recA homolog 3) F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:mitochondrion;BOAFMPV C.G. S.X.
0.01 5e+0 32 At3g04740 819634 SWP (STRUWWELPETER) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.32901.1.A1_at CD411653 - - 4e+0 At3g60010 ASK13 (ARABIDOPSIS SKP1-LIKE 13) C.G. S.X.
0.02 2e+0 32 Hordeum vulgare Contig6573_at Contig6573 - - 2e-3 At1g62500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.20934.1.S1_at - - - 0 C.G. S.X.
0.03 3e-2 40 Populus trichocarpa PtpAffx.220109.1.S1_at pmrna36433 hypothetical protein - 5e+0 At5g06080 LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33) C.G. S.X.
0.03 5e+0 32 Triticum aestivum Ta.1770.3.S1_x_at CA654693 - - 7e-2 At1g62500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1621452_at CF514057 - - 1e+0 At5g47060 senescence-associated protein-related C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1312.1.S1_at 40794996-140 - - 3e+0 At4g01595 ATP binding / MAP kinase/ protein kinase C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage