CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50400

Gene name GDSL-motif lipase/hydrolase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
1.00 100.0 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV S.X. H.G.
0.80 89.8 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.73 85.5 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.43 55.3 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
512.5 100.0 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
504.5 100.0 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
326.7 100.0 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
255.8 100.0 GSM184931 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
246.0 100.0 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
228.4 100.0 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
208.1 100.0 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
205.7 100.0 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
83.7 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 2e-6 54 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.03 2e-4 48 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.01 1e-1 38 At5g47280 834775 ADR1-L3 (ADR1-like 3) F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA C.G. S.X.
0.02 1e-1 38 At4g16230 827317 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.03 6e-1 36 At5g41890 834194 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBOFM C.G. S.X.
0.02 6e-1 36 At4g10950 826694 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBFOM C.G. S.X.
0.02 6e-1 36 At4g18970 827632 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.01 6e-1 36 At3g56150 824781 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) member of eIF3c - eukaryotic initiation factor 3c C.G. S.X.
0.01 6e-1 36 At1g64310 842737 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.88546.1.S1_at BE801134 - - 1e-1 At3g50400 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig12720_at Contig12720 - - 7e+0 At5g38180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 2e-2 42 Oryza sativa Os04g0577300 AK120597.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At3g50400 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.09 8e-1 36 Populus trichocarpa PtpAffx.207940.1.S1_at pmrna15758 - - 5e-1 At3g50400 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 9e+0 32 Triticum aestivum TaAffx.57869.1.S1_s_at CA624383 - - 1e+0 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1620015_at CB971082 - - 4e+0 At5g66400 RAB18 (RESPONSIVE TO ABA 18) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.17709.1.S1_at CK369588 - - 3e+0 At5g62660 F-box family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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