Gene omics information

Query gene ID At3g50340
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g50340824196unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBFOS.X.H.G.
0.114.1At4g32010829332HSL1 (HSI2-LIKE 1)F:transcription factor activity;P:seed maturation, positive regulation of seed germination, regulation of transcription;C:unknown;PMOS.X.H.G.
0.114.1At5g56790835781protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.061.4At1g26830839226ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.S.X.H.G.
0.030.6At2g32850817846protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAS.X.H.G.
0.010.2At3g57890824958tubulin-specific chaperone C-relatedF:binding;P:biological_process unknown;C:cellular_component unknown;MOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
135.999.9GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
127.099.9GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
109.599.9GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
97.599.9GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
87.299.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
79.999.9GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
76.899.9GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
72.099.9GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
68.599.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
58.599.8GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.745e-91335At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBC.G.S.X.
0.041e-242At5g18690831987AGP25 (ARABINOGALACTAN PROTEINS 25)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFBC.G.S.X.
0.011e-242At4g35240829677unknown proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBVC.G.S.X.
0.034e-240At4g27410828849RD26 (RESPONSIVE TO DESICCATION 26)Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.C.G.S.X.
0.012e-138At4g27020828810unknown proteinF:molecular_function unknown;P:unknown;C:vacuole;POC.G.S.X.
0.012e-138At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAC.G.S.X.
0.012e-138At1g29300839804UNE1 (unfertilized embryo sac 1)F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;PBOMFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.104e-654Glycine maxGma.14139.1.A1_atCD416275--7e-7At3g50340unknown proteinC.G.S.X.
0.021e+034Hordeum vulgarerbags1h06_s_atrbags1h06--3e+0At3g29790unknown proteinC.G.S.X.
0.023e-138Oryza sativaOs05g0439100AK099506.1-Hypothetical protein4e-1At1g61580RPL3B (R-PROTEIN L3 B)C.G.S.X.
0.308e-35149Populus trichocarpaPtpAffx.69736.1.A1_atCV245710hypothetical protein-1e-42At3g50340unknown proteinC.G.S.X.
0.023e+034Triticum aestivumTa.4482.1.S1_atBJ267004--6e-4At4g18690unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1617480_atCB342000hypothetical protein LOC100260825-2e-2At4g33660unknown proteinC.G.S.X.
0.021e+034Zea maysZm.1817.2.A1_atBM334118--3e-1At2g28625unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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