CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50320

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At3g45120 823648 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.71 84.2 At5g36840 833651 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.70 83.5 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
0.70 83.5 At5g37880 833767 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.69 82.9 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.67 81.6 At3g14670 820695 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
0.67 81.6 At3g43150 823381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At4g08890 3769919 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.60 75.7 At2g14410 3768296 - F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1415.6 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
287.3 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
207.8 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
202.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
200.3 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
191.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
190.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.8 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
186.1 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
180.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 36 At2g20320 816551 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB C.G. S.X.
0.01 8e-1 34 At5g62110 836331 DNA binding F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP C.G. S.X.
0.01 8e-1 34 At2g26570 817198 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.04 8e-1 34 At1g28510 839751 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.02 3e+0 32 At5g50180 835083 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA C.G. S.X.
0.01 3e+0 32 At4g34860 829638 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase;C:cytosol;OPB C.G. S.X.
0.03 3e+0 32 At4g13540 826986 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Glycine max HgAffx.9291.1.S1_at CB379210 - - 5e+0 At3g50320 unknown protein C.G. S.X.
0.04 6e+0 30 Hordeum vulgare Contig16196_at Contig16196 - - 2e-2 At4g20470 unknown protein C.G. S.X.
0.03 7e+0 32 Oryza sativa OsAffx.29587.1.S1_s_at - - - 0 C.G. S.X.
0.05 5e+0 32 Populus trichocarpa PtpAffx.221679.1.S1_s_at pmrna38687 hypothetical protein - 2e-2 At5g56720 malate dehydrogenase, cytosolic, putative C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.15043.1.S1_at CA687875 - - 1e+0 At1g23690 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1619692_x_at CF201937.1 - - 4e+0 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.03 6e+0 30 Zea mays Zm.7899.1.A1_at BM080344 hypothetical protein LOC100193249 - 1e+0 At1g65820 microsomal glutathione s-transferase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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