CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g50070

Gene name CYCD3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. S.X. H.G.
0.25 22.6 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.25 22.6 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) S.X. H.G.
0.17 10.2 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.2 99.8 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
37.1 99.7 GSM242956 Steroid day 1 (day1D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
36.3 99.7 GSM242955 Steroid day 1 (day1D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
34.9 99.7 GSM131672 ATGE_48_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
33.7 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
32.9 99.7 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
31.4 99.7 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
30.8 99.7 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
30.6 99.7 GSM131670 ATGE_48_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
29.3 99.7 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 5e-72 272 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. C.G. S.X.
0.11 1e-11 71 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. C.G. S.X.
0.03 9e-3 42 At1g70210 843357 CYCD1 Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination. C.G. S.X.
0.02 1e-1 38 At2g23000 816831 scpl10 (serine carboxypeptidase-like 10) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.03 5e-1 36 At5g28490 832941 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. C.G. S.X.
0.01 5e-1 36 At3g20475 821593 MSH5 (MUTS-HOMOLOGUE 5) Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-4 46 Glycine max GmaAffx.15397.1.S1_at BU927489 - - 1e-2 At2g22490 CYCD2 C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HO12E05S_at HO12E05S - - 1e+1 At4g24960 ATHVA22D C.G. S.X.
0.02 3e-1 38 Oryza sativa Os01g0385200 9629.m02766 - - 2e-2 At3g49307 Expressed protein C.G. S.X.
0.15 1e-11 71 Populus trichocarpa Ptp.5408.1.S1_s_at AY230139.1 hypothetical protein - 5e-11 At5g67260 CYCD3 C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.81980.1.S1_at CA679481 - - 1e+0 At5g59140 SKP1 family protein C.G. S.X.
0.14 3e-6 52 Vitis vinifera 1607495_at CF607413 hypothetical protein LOC100264093 - 3e-17 At4g34160 CYCD3 C.G. S.X.
0.01 4e+0 32 Zea mays Zm.4084.1.A1_at CK145425 CONSTANS interacting protein 6 - 8e-1 At5g28800 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0042127 Any process that modulates the frequency, rate or extent of cell proliferation.
C GO:0051726 Any process that modulates the rate or extent of progression through the cell cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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