CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g49860

Gene name ATARLA1B (ADP-ribosylation factor-like A1B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. S.X. H.G.
0.33 38.1 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) S.X. H.G.
0.33 38.1 At3g18560 821387 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.23 19.3 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.22 17.5 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.8 99.9 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.2 99.8 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
53.9 99.8 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
50.6 99.8 GSM142730 CH001_ATH1_A009-Hampt-wsc_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
47.9 99.8 GSM142727 CH001_ATH1_A006-Hampt-akb GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
46.5 99.8 GSM184494 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.2 99.8 E-MEXP-828-raw-cel-1156922944
41.6 99.8 GSM184496 Endodermis&Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.3 99.8 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
41.1 99.8 GSM157310 Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 9e-174 609 At3g49870 824149 ATARLA1C (ADP-ribosylation factor-like A1C) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. C.G. S.X.
0.80 4e-102 371 At5g67560 836892 ATARLA1D (ADP-ribosylation factor-like A1D) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. C.G. S.X.
0.28 1e-18 93 At5g37680 833747 ATARLA1A (ADP-ribosylation factor-like A1A) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases. C.G. S.X.
0.03 7e-2 38 At1g56330 842086 ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. C.G. S.X.
0.01 3e-1 36 At2g48160 819428 - F:unknown;P:unknown;C:unknown;MFBOPAV C.G. S.X.
0.02 1e+0 34 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV C.G. S.X.
0.01 1e+0 34 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB C.G. S.X.
0.01 4e+0 32 At5g36930 833662 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 3e-26 119 Glycine max Gma.7813.2.S1_at BE660328 - - 6e-76 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.16 3e-8 57 Hordeum vulgare Contig9022_at Contig9022 - - 2e-55 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.20 4e-11 69 Oryza sativa Os03g0200800 AK112007.1 - - 5e-35 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.28 4e-16 85 Populus trichocarpa PtpAffx.38755.2.S1_s_at CV252052 hypothetical protein - 2e-56 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.11 2e-2 40 Triticum aestivum Ta.3262.1.S1_at BQ806543 k12B20.15 protein - 2e-31 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.37 5e-37 153 Vitis vinifera 1619019_at CF213490 hypothetical protein LOC100243336 - 2e-102 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.14 2e-6 52 Zea mays Zm.4906.1.S1_at AW146712 Hypothetical protein LOC100193835 - 2e-34 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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