Gene omics information

Query gene ID At3g49840
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At3g49840824146unknown proteinF:unknown;P:unknown;C:endomembrane system;PBMS.X.H.G.
0.4457.2At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.4050.8At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.S.X.H.G.
0.3643.6At2g18980816415peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.3235.7At1g27140839603ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
249.1100.0GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
127.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
88.899.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
84.599.9GSM133973Birnbaum_1-3_src5-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis root
84.499.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
78.299.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.799.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
56.799.8GSM133985Birnbaum_1-15_StageIII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.142e-1687At5g67610836897unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOC.G.S.X.
0.012e-138At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.C.G.S.X.
0.022e-138At3g03220821224ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)C.G.S.X.
0.017e-136At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1C.G.S.X.
0.017e-136At5g47980834849transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFBC.G.S.X.
0.027e-136At5g35890833575beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:anchored to membrane;PC.G.S.X.
0.017e-136At4g36550829807binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBVC.G.S.X.
0.017e-136At4g36520829804heat shock protein bindingF:heat shock protein binding;P:unknown;C:unknown;MOBFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.88177.1.S1_s_atBU764117--2e+0At5g58782dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeC.G.S.X.
0.021e+034Hordeum vulgareContig12748_atContig12748--6e-2At1g80130bindingC.G.S.X.
0.023e-138Oryza sativaOs11g0430000AJ417520.1-Serine carboxypeptidase I precursor (EC C) (CP-MI)2e+0At2g47920kinase interacting family proteinC.G.S.X.
0.029e-136Populus trichocarpaPtpAffx.3487.1.S1_atCV275574hypothetical protein-1e-13At1g09560GLP5 (GERMIN-LIKE PROTEIN 5)C.G.S.X.
0.023e+034Triticum aestivumTaAffx.111471.1.S1_atCA639802--4e+0At1g17090unknown proteinC.G.S.X.
0.028e-134Vitis vinifera1616525_s_atCF200762.1hypothetical protein LOC100243581-1e-15At5g4643060S ribosomal protein L32 (RPL32B)C.G.S.X.
0.027e-238Zea maysZm.13759.2.A1_atCF627386hypothetical protein LOC100279293-7e-3At5g63840RSW3 (RADIAL SWELLING 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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